Equivalence class NR_all_31583.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6WB0|1|D+ 6WB0|1|C (rep) | HIV primer binding site (PBS) | tRNA lysine 3, HIV-1 viral RNA genome fragment | Homo sapiens | Viruses | RF00375 | +3 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state) | Electron microscopy | 4.2 | 2020-06-24 |
| 2 | 6WB2|1|D | tRNA lysine 3, HIV-1 viral RNA genome fragment | Homo sapiens | +3 extended HIV-1 reverse transcriptase initiation complex core (displaced state) | Electron microscopy | 4.5 | 2020-06-24 | |||
| 3 | 6WB1|1|D | tRNA lysine 3, HIV-1 viral RNA genome fragment | Homo sapiens | +3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state) | Electron microscopy | 4.7 | 2020-06-24 | |||
| 4 | 6B19|1|C+ 6B19|1|D | HIV primer binding site (PBS) | RNA genome fragment, tRNA lysine3 | Human immunodeficiency virus 1 | Viruses | RF00375 | Architecture of HIV-1 reverse transcriptase initiation complex core | Electron microscopy | 4.5 | 2018-04-25 |
| 5 | 7K1Z|9|A | HIV primer binding site (PBS) | RNA (103-MER) | Human immunodeficiency virus 1 | Viruses | RF00375 | Solution structure of the HIV-1 PBS-segment | Solution scattering, solution NMR | 2020-09-23 |
Release history
| Release | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_31583.1 | NR_all_47604.1 | 3.145 | (1) 6B19|1|C+6B19|1|D | (4) 7K1Z|9|A, 6WB2|1|D, 6WB1|1|D, 6WB0|1|D+6WB0|1|C | (0) |
| NR_all_31583.1 | NR_all_55535.1 | 3.145 | (1) 6WB2|1|D | (4) 7K1Z|9|A, 6WB1|1|D, 6WB0|1|D+6WB0|1|C, 6B19|1|C+6B19|1|D | (0) |
| NR_all_31583.1 | NR_all_63705.1 | 3.145 | (1) 6WB0|1|D+6WB0|1|C | (4) 7K1Z|9|A, 6WB2|1|D, 6WB1|1|D, 6B19|1|C+6B19|1|D | (0) |
| NR_all_31583.1 | NR_all_81231.1 | 3.145 | (1) 6WB1|1|D | (4) 7K1Z|9|A, 6WB2|1|D, 6WB0|1|D+6WB0|1|C, 6B19|1|C+6B19|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_31583.1 | NR_all_42621.1 | 3.170 | (1) 6WB1|1|D | (4) 6B19|1|C+6B19|1|D, 6WB2|1|D, 6WB0|1|D+6WB0|1|C, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_70680.1 | 3.170 | (1) 6WB0|1|D+6WB0|1|C | (4) 6WB1|1|D, 7K1Z|9|A, 6B19|1|C+6B19|1|D, 6WB2|1|D | (0) |
| NR_all_31583.1 | NR_all_98766.1 | 3.170 | (1) 6B19|1|C+6B19|1|D | (4) 6WB1|1|D, 7K1Z|9|A, 6WB0|1|D+6WB0|1|C, 6WB2|1|D | (0) |
| NR_all_31583.1 | NR_all_99630.1 | 3.170 | (1) 6WB2|1|D | (4) 6B19|1|C+6B19|1|D, 6WB1|1|D, 6WB0|1|D+6WB0|1|C, 7K1Z|9|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6WB1|1|D | +3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state) | ELECTRON MICROSCOPY | 4.7 | 38 |
| 2 | 6B19|1|C+6B19|1|D | Architecture of HIV-1 reverse transcriptase initiation complex core | ELECTRON MICROSCOPY | 4.5 | 19 |
| 3 | 6WB2|1|D | +3 extended HIV-1 reverse transcriptase initiation complex core (displaced state) | ELECTRON MICROSCOPY | 4.5 | 38 |
| 4 | 6WB0|1|D+6WB0|1|C | +3 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state) | ELECTRON MICROSCOPY | 4.2 | 38 |
| 5 | 7K1Z|9|A | Solution structure of the HIV-1 PBS-segment | SOLUTION SCATTERING, SOLUTION NMR | 103 |