Equivalence class NR_all_31819.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1QTQ|1|B (rep) | Transfer RNA | RNA (TRNA GLN II ) | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-ray diffraction | 2.25 | 1998-05-27 |
| 2 | 4JXX|1|B | RNA (71-MER) | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-ray diffraction | 2.3 | 2013-05-01 | ||||
| 3 | 1ZJW|1|B | Glutaminyl-tRNA | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-ray diffraction | 2.5 | 2005-06-07 | ||||
| 4 | 4V7M|1|AW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 5 | 4V7M|1|CW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 6 | 4V7L|1|AW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 4V7L|1|CW | Transfer RNA | tRNA-Gln, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3') | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 1EUY|1|B | GLUTAMINYL TRNA | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-ray diffraction | 2.6 | 2000-06-04 | ||||
| 9 | 4V7L|1|AY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 10 | 4V7L|1|CY | Transfer RNA | tRNA-Gln | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 11 | 1EUQ|1|B | GLUTAMINYL TRNA | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-ray diffraction | 3.1 | 2000-06-04 | ||||
| 12 | 1QRS|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.6 | 1996-12-07 |
| 13 | 1QRT|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 2.7 | 1996-12-07 |
| 14 | 1QRU|1|B | Transfer RNA | TRNAGLN2 | Escherichia coli | Bacteria | RF00005 | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-ray diffraction | 3 | 1996-12-07 |
| 15 | 1GTR|1|B | RNA (74-MER) | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.5 | 1995-02-07 | ||||
| 16 | 2RD2|1|B | Glutamine tRNA | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 2008-01-15 | ||||
| 17 | 1GTS|1|B | Transfer RNA | TRNAGLN | Escherichia coli | Bacteria | RF00005 | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-ray diffraction | 2.8 | 1995-02-07 |
| 18 | 5NWY|1|M | Transfer RNA | Gln-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 2017-07-19 |
| 19 | 2RE8|1|B | Glutamine tRNA | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-ray diffraction | 2.6 | 2008-01-15 | ||||
| 20 | 1GSG|1|T | TRNAGLN | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-ray diffraction | 2.8 | 1992-02-24 | ||||
| 21 | 1O0C|1|B | Glutaminyl tRNA | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2003-04-15 | ||||
| 22 | 1O0B|1|B | Glutaminyl tRNA | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2003-04-15 | ||||
| 23 | 7QG8|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | Electron microscopy | 3.97 | 2022-03-16 |
| 24 | 7QGH|1|M | Transfer RNA | P-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the E. coli disome - collided 70S ribosome | Electron microscopy | 4.48 | 2022-03-16 |
| 25 | 1EXD|1|B | GLUTAMINE TRNA APTAMER | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-ray diffraction | 2.7 | 2000-05-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_31819.3 | NR_all_31819.2 | 3.222 | (23) 4JXX|1|B, 2RE8|1|B, 2RD2|1|B, 1ZJW|1|B, 1QTQ|1|B, 1QRU|1|B, 1QRT|1|B, 1QRS|1|B, 1O0C|1|B, 1O0B|1|B, 5NWY|1|M, 1GTS|1|B, 4V7M|1|CW, 1GTR|1|B, 4V7M|1|AW, 1GSG|1|T, 4V7L|1|CY, 1EXD|1|B, 4V7L|1|CW, 1EUY|1|B, 4V7L|1|AY, 1EUQ|1|B, 4V7L|1|AW | (2) 7QG8|1|M, 7QGH|1|M | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_31819.3 | NR_all_31819.4 | 3.228 | (25) 4JXX|1|B, 2RE8|1|B, 2RD2|1|B, 1ZJW|1|B, 1QTQ|1|B, 1QRU|1|B, 1QRT|1|B, 7QGH|1|M, 1QRS|1|B, 7QG8|1|M, 1O0C|1|B, 5NWY|1|M, 1O0B|1|B, 4V7M|1|CW, 1GTS|1|B, 4V7M|1|AW, 1GTR|1|B, 4V7L|1|CY, 1GSG|1|T, 4V7L|1|CW, 1EXD|1|B, 4V7L|1|AY, 1EUY|1|B, 4V7L|1|AW, 1EUQ|1|B | (0) | (1) 7QGN|1|M |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V7L|1|AY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 2 | 4V7L|1|CY | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 3 | 7QG8|1|M | Structure of the collided E. coli disome - VemP-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.97 | 75 |
| 4 | 7QGH|1|M | Structure of the E. coli disome - collided 70S ribosome | ELECTRON MICROSCOPY | 4.48 | 75 |
| 5 | 5NWY|1|M | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 75 |
| 6 | 4V7L|1|CW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 7 | 4V7M|1|AW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 |
| 8 | 4V7L|1|AW | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 75 |
| 9 | 4V7M|1|CW | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 74 |
| 10 | 2RD2|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 |
| 11 | 2RE8|1|B | Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE | X-RAY DIFFRACTION | 2.6 | 74 |
| 12 | 1ZJW|1|B | Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA | X-RAY DIFFRACTION | 2.5 | 74 |
| 13 | 1O0B|1|B | CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 |
| 14 | 1O0C|1|B | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 74 |
| 15 | 1QTQ|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | X-RAY DIFFRACTION | 2.25 | 74 |
| 16 | 1QRS|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.6 | 74 |
| 17 | 1QRT|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 2.7 | 74 |
| 18 | 1QRU|1|B | GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA | X-RAY DIFFRACTION | 3 | 74 |
| 19 | 1GTS|1|B | STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.8 | 74 |
| 20 | 1GTR|1|B | STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.5 | 74 |
| 21 | 4JXX|1|B | Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions | X-RAY DIFFRACTION | 2.3 | 71 |
| 22 | 1EUY|1|B | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR | X-RAY DIFFRACTION | 2.6 | 73 |
| 23 | 1EUQ|1|B | CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR | X-RAY DIFFRACTION | 3.1 | 72 |
| 24 | 1EXD|1|B | CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | X-RAY DIFFRACTION | 2.7 | 73 |
| 25 | 1GSG|1|T | Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution | X-RAY DIFFRACTION | 2.8 | 66 |