Equivalence class NR_all_33014.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep) | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | Electron microscopy | 3.2 | 2023 | 2020-09-16 |
| 2 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | Electron microscopy | 3.4 | 2007 | 2020-08-05 |
| 3 | 6ZQG|1|D3 | Small subunit ribosomal RNA | 18S rRNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | Electron microscopy | 3.5 | 1387 | 2020-09-23 |
| 4 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | Electron microscopy | 3.7 | 1940 | 2020-09-16 |
| 5 | 6ZQD|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | Electron microscopy | 3.8 | 1409 | 2020-09-23 |
| 6 | 6LQS|1|SA | Small subunit ribosomal RNA | 18S pre-rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | Electron microscopy | 3.8 | 1249 | 2020-09-16 |
| 7 | 6LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | Electron microscopy | 4.1 | 1873 | 2020-09-16 |
| 8 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5ETS RNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | Electron microscopy | 3.9 | 1895 | 2020-09-23 |
| 9 | 6ZQC|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | Electron microscopy | 3.8 | 1327 | 2020-09-23 |
| 10 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | The complete structure of the small subunit processome | Electron microscopy | 3.8 | 1682 | 2017-09-27 |
| 11 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | Electron microscopy | 4.5 | 1619 | 2017-03-29 |
| 12 | 6LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | Electron microscopy | 4.9 | 1173 | 2020-09-16 |
| 13 | 6LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | Electron microscopy | 4.8 | 963 | 2020-09-16 |
| 14 | 6ZQF|1|D3 | Small subunit ribosomal RNA | 18S rRNA, 5ETS RNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | Electron microscopy | 4.9 | 1392 | 2020-09-23 |
| 15 | 5TZS|1|1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Architecture of the yeast small subunit processome | Electron microscopy | 5.1 | 515 | 2016-12-21 |
| 16 | 6ZQE|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | Electron microscopy | 7.1 | 1447 | 2020-09-23 |
| 17 | 6LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | Electron microscopy | 8.6 | 1650 | 2020-09-16 |
| 18 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | Electron microscopy | 8.7 | 1734 | 2017-03-29 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_33014.2 | NR_all_33014.1 | 3.145 | (12) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQS|1|SA, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A | (6) 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQC|1|D3, 6ZQD|1|D3, 6ZQE|1|D3, 6ZQF|1|D3, 6ZQG|1|D3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_33014.2 | NR_all_33014.3 | 3.159 | (18) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQS|1|SA, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQC|1|D3, 6ZQD|1|D3, 6ZQE|1|D3, 6ZQF|1|D3, 6ZQG|1|D3 | (0) | (2) 7AJT|1|D3, 7AJU|1|D3 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 1734 | |
| 2 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 1619 | |
| 3 | 5TZS|1|1 | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 515 | |
| 4 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1682 | |
| 5 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | ELECTRON MICROSCOPY | 3.7 | 1940 | |
| 6 | 6LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | ELECTRON MICROSCOPY | 4.8 | 963 | |
| 7 | 6LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | ELECTRON MICROSCOPY | 8.6 | 1650 | |
| 8 | 6LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | ELECTRON MICROSCOPY | 4.1 | 1873 | |
| 9 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 2007 | |
| 10 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 2023 | |
| 11 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | ELECTRON MICROSCOPY | 3.9 | 1895 | |
| 12 | 6ZQC|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | ELECTRON MICROSCOPY | 3.8 | 1327 | |
| 13 | 6LQS|1|SA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | ELECTRON MICROSCOPY | 3.8 | 1249 | |
| 14 | 6LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | ELECTRON MICROSCOPY | 4.9 | 1173 | |
| 15 | 6ZQD|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | ELECTRON MICROSCOPY | 3.8 | 1409 | |
| 16 | 6ZQE|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | ELECTRON MICROSCOPY | 7.1 | 1447 | |
| 17 | 6ZQF|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | ELECTRON MICROSCOPY | 4.9 | 1392 | |
| 18 | 6ZQG|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 1387 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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