Equivalence class NR_all_33014.2 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep) | 18S pre-rRNA, 5' ETS, U3 snoRNA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 2020-09-16 | |
2 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | 18S rRNA, 5' ETS, U3 snoRNA | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 2020-08-05 | |
3 | 6ZQG|1|D3 | 18S rRNA, U3 snoRNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 2020-09-23 |
4 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | 18S pre-rRNA, 5' ETS, U3 snoRNA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | ELECTRON MICROSCOPY | 3.7 | 2020-09-16 | |
5 | 6ZQD|1|D3 | 18S rRNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | ELECTRON MICROSCOPY | 3.8 | 2020-09-23 |
6 | 6LQS|1|SA | 18S pre-rRNA | Saccharomyces cerevisiae | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | ELECTRON MICROSCOPY | 3.8 | 2020-09-16 |
7 | 6LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3A | 18S pre-rRNA, 5' ETS, U3 snoRNA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | ELECTRON MICROSCOPY | 4.1 | 2020-09-16 | |
8 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | 18S rRNA, 5ETS RNA, U3 snoRNA | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | ELECTRON MICROSCOPY | 3.9 | 2020-09-23 | |
9 | 6ZQC|1|D3 | 18S rRNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | ELECTRON MICROSCOPY | 3.8 | 2020-09-23 |
10 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | 18S pre-rRNA, 5' ETS, U3 snoRNA | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 2017-09-27 | |
11 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 2017-03-29 | |
12 | 6LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5A | 18S pre-rRNA, U3 snoRNA, 5' ETS | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | ELECTRON MICROSCOPY | 4.9 | 2020-09-16 | |
13 | 6LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5A | 18S pre-rRNA, U3 snoRNA, 5' ETS | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | ELECTRON MICROSCOPY | 4.8 | 2020-09-16 | |
14 | 6ZQF|1|D3 | 18S rRNA, U3 snoRNA, 5ETS RNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | ELECTRON MICROSCOPY | 4.9 | 2020-09-23 |
15 | 5TZS|1|1 | 18S ribosomal RNA | Saccharomyces cerevisiae | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 2016-12-21 |
16 | 6ZQE|1|D3 | 18S rRNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | ELECTRON MICROSCOPY | 7.1 | 2020-09-23 |
17 | 6LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3A | 18S pre-rRNA, 5' ETS, U3 snoRNA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | ELECTRON MICROSCOPY | 8.6 | 2020-09-16 | |
18 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 2017-03-29 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_33014.2 | NR_all_33014.1 | 3.145 | (12) 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6LQS|1|SA, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 5TZS|1|1, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | (6) 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQF|1|D3, 6ZQG|1|D3, 6ZQE|1|D3, 6ZQD|1|D3, 6ZQC|1|D3 | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_33014.2 | NR_all_33014.3 | 3.159 | (18) 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6ZQD|1|D3, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6ZQC|1|D3, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6ZQG|1|D3, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6ZQF|1|D3, 5TZS|1|1, 6LQS|1|SA, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6ZQE|1|D3 | (0) | (2) 7AJU|1|D3, 7AJT|1|D3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 1115 |
2 | 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 1000 |
3 | 5TZS|1|1 | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 515 |
4 | 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1025 |
5 | 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | ELECTRON MICROSCOPY | 3.7 | 1242 |
6 | 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | ELECTRON MICROSCOPY | 4.8 | 950 |
7 | 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | ELECTRON MICROSCOPY | 8.6 | 1283 |
8 | 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | ELECTRON MICROSCOPY | 4.1 | 1323 |
9 | 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 1310 |
10 | 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 1325 |
11 | 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | ELECTRON MICROSCOPY | 3.9 | 1198 |
12 | 6ZQC|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | ELECTRON MICROSCOPY | 3.8 | 1327 |
13 | 6LQS|1|SA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | ELECTRON MICROSCOPY | 3.8 | 1249 |
14 | 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | ELECTRON MICROSCOPY | 4.9 | 1155 |
15 | 6ZQD|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | ELECTRON MICROSCOPY | 3.8 | 1409 |
16 | 6ZQE|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | ELECTRON MICROSCOPY | 7.1 | 1447 |
17 | 6ZQF|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) | ELECTRON MICROSCOPY | 4.9 | 1392 |
18 | 6ZQG|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 1387 |