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Equivalence class NR_all_33014.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)Electron microscopy3.22020-09-16
26KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeElectron microscopy3.42020-08-05
36ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CElectron microscopy3.52020-09-23
46LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)Electron microscopy3.72020-09-16
57D4I|1|SASmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)Electron microscopy42021-10-06
66ZQD|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1Electron microscopy3.82020-09-23
77AJU|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)Electron microscopy3.82020-12-30
86LQS|1|SASmall subunit ribosomal RNA18S pre-rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)Electron microscopy3.82020-09-16
96LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)Electron microscopy4.12020-09-16
106ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2Electron microscopy3.92020-09-23
116ZQC|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1Electron microscopy3.82020-09-23
125WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846The complete structure of the small subunit processomeElectron microscopy3.82017-09-27
137D5S|1|SA+ 7D5S|1|5A+ 7D5S|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiae S288CEukaryaRF01960 + RF01846Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)Electron microscopy4.62021-10-06
145WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)Electron microscopy4.52017-03-29
157AJT|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)Electron microscopy4.62020-12-30
166LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, U3 snoRNA, 5' ETSSaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)Electron microscopy4.92020-09-16
176LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, U3 snoRNA, 5' ETSSaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)Electron microscopy4.82020-09-16
186ZQF|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNA, 5ETS RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)Electron microscopy4.92020-09-23
197D5T|1|SASmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)Electron microscopy62021-10-06
205TZS|1|1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Architecture of the yeast small subunit processomeElectron microscopy5.12016-12-21
216ZQE|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)Electron microscopy7.12020-09-23
226LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)Electron microscopy8.62020-09-16
235WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)Electron microscopy8.72017-03-29
247D63|1|SA+ 7D63|1|5A+ 7D63|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiae S288CEukaryaRF01960 + RF01846Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)Electron microscopy12.32021-10-06

Release history

Release3.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.230
Date2021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_33014.4NR_all_33014.33.199(20) 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 7AJU|1|D3, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 7AJT|1|D3, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6ZQG|1|D3, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6ZQF|1|D3, 5TZS|1|1, 6LQS|1|SA, 6ZQE|1|D3, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6ZQD|1|D3, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6ZQC|1|D3, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A(4) 7D4I|1|SA, 7D63|1|SA+7D63|1|5A+7D63|1|3A, 7D5T|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_33014.4NR_all_03510.443.231(24) 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6ZQE|1|D3, 6LQS|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A, 6ZQC|1|D3, 7AJU|1|D3, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6ZQG|1|D3, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 7D5T|1|SA, 7D4I|1|SA, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 7AJT|1|D3, 7D63|1|SA+7D63|1|5A+7D63|1|3A, 6ZQF|1|D3, 5TZS|1|1, 6ZQD|1|D3, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4(0) (131) 4U53|1|6, 5MEI|1|A, 4U56|1|6, 6T83|1|2b, 5NDV|1|6, 4U4N|1|6, 6WOO|1|2, 4U4Q|1|6, 5ON6|1|6, 6Z6K|1|C2, 5TGA|1|2, 4U4Y|1|2, 4V7R|1|C1, 7A1G|1|2, 5JUO|1|A, 4U50|1|2, 5JUU|1|A, 6FAI|1|2, 7NRC|1|S2, 4U52|1|6, 7PZY|1|A, 5MC6|1|2, 4U55|1|6, 6T7I|1|C2, 5NDG|1|6, 6HHQ|1|A, 6TB3|1|2, 3J6Y|1|1S, 4V6I|1|CA, 5OBM|1|2, 4V88|1|A6, 6Y7C|1|2, 5TBW|1|A, 6ZU9|1|2, 4U3M|1|6, 4U4Z|1|2, 5DC3|1|2, 5TGM|1|6, 5DGF|1|2, 7MPJ|1|B5, 4U4N|1|2, 6GQB|1|2, 4U51|1|6, 7OSA|1|18S, 6I7O|1|2b, 7RR5|1|C2, 6S47|1|BA, 4U6F|1|2, 5I4L|1|6, 3J78|1|1S, 5NDW|1|2, 6T4Q|1|C2, 4U3U|1|2, 5DAT|1|2, 4U4O|1|2, 5TGA|1|6, 5DGE|1|2, 7B7D|1|2, 6T83|1|a, 4U4R|1|6, 5DGV|1|6, 7NRD|1|S2, 6HHQ|1|sR, 5JUP|1|A, 7Q0F|1|A, 6RBD|1|2, 4U4Y|1|6, 5LYB|1|2, 6SV4|1|2b, 4V7R|1|A1, 5MEI|1|6, 4U3N|1|2, 4U51|1|2, 6T7T|1|C2, 4V8Y|1|B2, 5DC3|1|6, 6Z6J|1|C2, 5DGF|1|6, 4U4U|1|6, 6GQV|1|2, 6Q8Y|1|2, 4U52|1|2, 6SNT|1|2, 5M1J|1|22, 7N8B|1|B5, 4U3U|1|6, 5NDW|1|6, 4U4O|1|6, 6XIR|1|2, 4U6F|1|6, 4U4U|1|2, 5I4L|1|2, 5TGM|1|2, 7MPI|1|B5, 5JUS|1|A, 5LYB|1|6, 7Q0P|1|A, 6XIQ|1|2, 4V8Z|1|B2, 4U3N|1|

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15WYK|1|SA+5WYK|1|5A+5WYK|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)ELECTRON MICROSCOPY4.51000
25WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)ELECTRON MICROSCOPY8.71115
35TZS|1|1Architecture of the yeast small subunit processomeELECTRON MICROSCOPY5.1515
45WLC|1|L1+5WLC|1|L0+5WLC|1|L2The complete structure of the small subunit processomeELECTRON MICROSCOPY3.81025
57D5S|1|SA+7D5S|1|5A+7D5S|1|3ACryo-EM structure of 90S preribosome with inactive Utp24 (state A2)ELECTRON MICROSCOPY4.6859
66LQU|1|SA+6LQU|1|5A+6LQU|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.71242
76LQV|1|SA+6LQV|1|3A+6LQV|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State C1)ELECTRON MICROSCOPY4.8950
86LQR|1|SA+6LQR|1|5A+6LQR|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State C)ELECTRON MICROSCOPY8.61283
96LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State B)ELECTRON MICROSCOPY4.11323
106KE6|1|SA+6KE6|1|5A+6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
116LQP|1|SA+6LQP|1|5A+6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
126ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.91198
137AJT|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)ELECTRON MICROSCOPY4.61327
146ZQC|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.81327
156LQT|1|SA+6LQT|1|3A+6LQT|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State E)ELECTRON MICROSCOPY4.91155
166LQS|1|SACryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.81249
177D63|1|SA+7D63|1|5A+7D63|1|3ACryo-EM structure of 90S preribosome with inactive Utp24 (state C)ELECTRON MICROSCOPY12.31331
187D4I|1|SACryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)ELECTRON MICROSCOPY41337
197D5T|1|SACryo-EM structure of 90S preribosome with inactive Utp24 (state F1)ELECTRON MICROSCOPY61189
207AJU|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.81409
216ZQD|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.81409
226ZQE|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)ELECTRON MICROSCOPY7.11447
236ZQF|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)ELECTRON MICROSCOPY4.91392
246ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387
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