BGSU RNA Site //

Equivalence class NR_all_34359.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructSyntheticRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-ray diffraction2.92006-12-12
22NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-ray diffraction3.62006-12-19
32E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-ray diffraction3.412006-12-19
42E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-ray diffraction3.952006-12-12
52NVZ|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructSyntheticRNA Polymerase II elongation complex with UTP, updated 11/2006X-ray diffraction4.32006-12-19
61SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-ray diffraction3.612004-03-02
71R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-ray diffraction3.52004-11-16
82YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructSyntheticRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-ray diffraction3.42007-04-24
91R9S|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-ray diffraction4.252004-11-16
105VVR|1|RRNASaccharomyces cerevisiaeEukaryaTernary complex of RNA Pol II, transcription scaffold and Rad26Electron microscopy5.82017-11-22
115VVS|1|RRNASaccharomyces cerevisiaeEukaryaRNA pol II elongation complexElectron microscopy6.42017-11-22

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.36
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_34359.2NR_all_34359.13.0(9) 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R, 1R9S|1|R, 2YU9|1|R, 2NVZ|1|R, 2NVX|1|R, 2NVQ|1|R(2) 5VVR|1|R, 5VVS|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_34359.2NR_all_34359.33.37(11) 2NVZ|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 5VVS|1|R, 1SFO|1|R, 5VVR|1|R, 1R9T|1|R, 2YU9|1|R, 1R9S|1|R(0) (2) 6H68|1|R, 6H67|1|R

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11R9S|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.2510
21R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
31SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
42NVZ|1|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.310
52E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
62NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
72E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
82YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
92NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
105VVR|1|RTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.810
115VVS|1|RRNA pol II elongation complexELECTRON MICROSCOPY6.410