Equivalence class NR_all_35133.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GCS|1|B (rep) | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 122 | 2006-09-26 | ||
| 2 | 2HO7|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA, glmS ribozyme substrate RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.9 | 122 | 2006-09-26 | ||
| 3 | 2H0X|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.3 | 122 | 2006-09-26 | ||
| 4 | 2Z75|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-ray diffraction | 1.7 | 123 | 2007-09-04 |
| 5 | 2HO6|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA, glmS ribozyme substrate RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.8 | 122 | 2006-09-26 | ||
| 6 | 3B4B|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA, glmS ribozyme substrate with 2'5'-phosphodiester linkage | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 2.7 | 123 | 2007-12-11 |
| 7 | 2GCV|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 122 | 2006-09-26 | ||
| 8 | 2H0W|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.4 | 122 | 2006-09-26 | ||
| 9 | 2H0S|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.35 | 122 | 2006-09-26 | ||
| 10 | 2Z74|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.2 | 123 | 2007-09-04 | ||
| 11 | 3B4A|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA, glmS ribozyme substrate RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-ray diffraction | 2.7 | 121 | 2007-12-11 |
| 12 | 4MEG|1|B | glmS glucosamine-6-phosphate activated ribozyme | (121-MER) ribozyme, glmS triple mutant ribozyme | RF00234 | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-ray diffraction | 3.1 | 121 | 2013-10-16 | ||
| 13 | 2H0Z|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.7 | 123 | 2006-09-26 | ||
| 14 | 3B4C|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA, glmS ribozyme substrate with a 2'5'-phosphodiester linkage | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 3 | 121 | 2007-12-11 |
| 15 | 4MEH|1|B | glmS glucosamine-6-phosphate activated ribozyme | (122-MER) ribozyme, glmS triple mutant ribozyme | RF00234 | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-ray diffraction | 3.12 | 122 | 2013-10-16 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
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| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4MEG|1|B | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-RAY DIFFRACTION | 3.1 | 121 | |
| 2 | 2H0S|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.35 | 122 | |
| 3 | 2GCV|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 | |
| 4 | 2H0W|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 122 | |
| 5 | 2HO6|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 122 | |
| 6 | 2HO7|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 122 | |
| 7 | 3B4B|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 123 | |
| 8 | 2GCS|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 | |
| 9 | 2H0X|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 122 | |
| 10 | 2Z75|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 123 | |
| 11 | 2H0Z|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.7 | 123 | |
| 12 | 2Z74|1|B | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 123 | |
| 13 | 3B4A|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 121 | |
| 14 | 3B4C|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 121 | |
| 15 | 4MEH|1|B | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-RAY DIFFRACTION | 3.12 | 122 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: