Equivalence class NR_all_38606.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1YN2|1|A (rep) | VS RIBOZYME STEM-LOOP V | Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions | Solution NMR | 2006-01-24 | |||||
| 2 | 1YN1|1|A | VS RIBOZYME STEM-LOOP V | Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2 | Solution NMR | 2006-01-24 | |||||
| 3 | 1TBK|1|A | VS ribozyme stem-loop V | NMR structure of the VS ribozyme stem-loop V RNA in the absence of multivalent ions. | Solution NMR | 2005-03-01 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_38606.2 | NR_all_38606.1 | 2.46 | (2) 1YN2|1|A, 1YN1|1|A | (1) 1TBK|1|A | (0) |
| NR_all_38606.2 | NR_all_45955.1 | 2.46 | (1) 1TBK|1|A | (2) 1YN2|1|A, 1YN1|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_38606.2 | NR_all_38606.3 | 2.93 | (2) 1YN1|1|A, 1YN2|1|A | (1) 1TBK|1|A | (0) |
| NR_all_38606.2 | NR_all_84251.1 | 2.93 | (1) 1TBK|1|A | (2) 1YN1|1|A, 1YN2|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1YN1|1|A | Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2 | SOLUTION NMR | 17 | |
| 2 | 1YN2|1|A | Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions | SOLUTION NMR | 17 | |
| 3 | 1TBK|1|A | NMR structure of the VS ribozyme stem-loop V RNA in the absence of multivalent ions. | SOLUTION NMR | 17 |