Equivalence class NR_all_38961.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7OSM|1|ASIT (rep) | Transfer RNA | MRNA, PHE tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 76 | 2021-12-08 |
| 2 | 6ZVI|1|d | Transfer RNA | A/P-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Mbf1-ribosome complex | Electron microscopy | 3 | 76 | 2020-09-09 |
| 3 | 6SV4|1|nb | Transfer RNA | tRNA (A/P) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 76 | 2020-03-04 |
| 4 | 6SV4|1|nc | Transfer RNA | tRNA (A/P) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 76 | 2020-03-04 |
| 5 | 6I7O|1|nb | Transfer RNA | A/P hybrid tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 76 | 2019-01-16 |
Release history
| Release | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_38961.3 | NR_all_38961.2 | 3.208 | (4) 6I7O|1|nb, 6SV4|1|nb, 6SV4|1|nc, 6ZVI|1|d | (1) 7OSM|1|ASIT | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_38961.3 | NR_all_38961.4 | 3.271 | (5) 6I7O|1|nb, 6SV4|1|nb, 6SV4|1|nc, 6ZVI|1|d, 7OSM|1|ASIT | (0) | (1) 7ZUX|1|6 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6ZVI|1|d | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 76 | |
| 2 | 6I7O|1|nb | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 76 | |
| 3 | 6SV4|1|nb | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 76 | |
| 4 | 6SV4|1|nc | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 76 | |
| 5 | 7OSM|1|ASIT | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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