Equivalence class NR_all_38966.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6JDV|1|B (rep) | sgRNA | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-ray diffraction | 3.1 | 2019-11-06 | |||
| 2 | 6JE4|1|F | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 | |||
| 3 | 6KC8|1|B | sgRNA | synthetic construct | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-ray diffraction | 2.9 | 2019-11-06 | |||
| 4 | 6JE4|1|L | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 | |||
| 5 | 6JE4|1|P | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 | |||
| 6 | 6JE4|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 | |||
| 7 | 6JE3|1|B | sgRNA | synthetic construct | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-ray diffraction | 2.93 | 2019-11-06 | |||
| 8 | 6JE9|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 2019-11-06 | |||
| 9 | 6JFU|1|B | sgRNA | synthetic construct | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-ray diffraction | 3.2 | 2019-11-06 | |||
| 10 | 6JE9|1|D | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 2019-11-06 | |||
| 11 | 6KC7|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-ray diffraction | 3.3 | 2019-11-06 | |||
| 12 | 6JDQ|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA | X-ray diffraction | 2.95 | 2019-11-06 | |||
| 13 | 8HJ4|1|B | CRISPR RNA direct repeat element | sgRNA | Neisseria meningitidis 8013 | Bacteria | RF01344 | CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex | Electron microscopy | 3.1 | 2023-01-25 |
| 14 | 8JA0|1|B | CRISPR RNA direct repeat element | RNA (117-MER) | Neisseria meningitidis | Bacteria | RF01344 | Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex | Electron microscopy | 3.52 | 2023-08-09 |
Release history
| Release | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8HJ4|1|B | CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex | ELECTRON MICROSCOPY | 3.1 | 113 |
| 2 | 6JE4|1|L | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 133 |
| 3 | 6JE4|1|F | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 132 |
| 4 | 6JE4|1|P | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 130 |
| 5 | 6JE4|1|B | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 132 |
| 6 | 6JDQ|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA | X-RAY DIFFRACTION | 2.95 | 117 |
| 7 | 6JE9|1|D | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 113 |
| 8 | 6JE9|1|B | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 115 |
| 9 | 6KC7|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-RAY DIFFRACTION | 3.3 | 111 |
| 10 | 6KC8|1|B | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-RAY DIFFRACTION | 2.9 | 130 |
| 11 | 6JDV|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-RAY DIFFRACTION | 3.1 | 143 |
| 12 | 6JE3|1|B | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-RAY DIFFRACTION | 2.93 | 117 |
| 13 | 6JFU|1|B | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-RAY DIFFRACTION | 3.2 | 105 |
| 14 | 8JA0|1|B | Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex | ELECTRON MICROSCOPY | 3.52 | 115 |