BGSU RNA Site //

Equivalence class NR_all_40313.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17ZHG|1|2 (rep)Small subunit ribosomal RNArRNA 16S, mRNAPyrococcus abyssi GE5ArchaeaRF01959High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loopELECTRON MICROSCOPY2.252022-06-29
26TH6|1|AaSmall subunit ribosomal RNA16S ribosomal RNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.552020-07-29
36SKG|1|AaSmall subunit ribosomal RNA16S ribosomal RNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strainELECTRON MICROSCOPY2.652020-07-29
46TMF|1|ASmall subunit ribosomal RNA16S ribosomal RNAThermococcus celerArchaeaRF01959Structure of an archaeal ABCE1-bound ribosomal post-splitting complexELECTRON MICROSCOPY2.82020-02-12
56SKF|1|AaSmall subunit ribosomal RNA16S rRNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.952020-07-29
66SWC|1|2Small subunit ribosomal RNA16S ribosomal rRNA, mRNAPyrococcus abyssiArchaeaRF01959IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY3.32020-02-19
76SW9|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY4.22020-02-19
85JB3|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformationELECTRON MICROSCOPY5.342016-11-30
95JBH|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformationELECTRON MICROSCOPY5.342016-12-07

Release history

Release3.2373.238
Date2022-06-292022-07-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_40313.2NR_all_40313.13.237(8) 6TH6|1|Aa, 6SWC|1|2, 6SW9|1|2, 6SKG|1|Aa, 6SKF|1|Aa, 5JBH|1|2, 5JB3|1|2, 6TMF|1|A(1) 7ZHG|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_40313.2NR_all_40313.33.239(9) 7ZHG|1|2, 6TMF|1|A, 6TH6|1|Aa, 6SWC|1|2, 6SW9|1|2, 6SKG|1|Aa, 6SKF|1|Aa, 5JBH|1|2, 5JB3|1|2(0) (1) 7ZAI|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16SW9|1|2IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY4.21454
26SWC|1|2IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY3.31454
37ZHG|1|2High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loopELECTRON MICROSCOPY2.251429
45JBH|1|2Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformationELECTRON MICROSCOPY5.341495
55JB3|1|2Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformationELECTRON MICROSCOPY5.341495
66TMF|1|AStructure of an archaeal ABCE1-bound ribosomal post-splitting complexELECTRON MICROSCOPY2.81485
76SKG|1|AaCryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strainELECTRON MICROSCOPY2.651399
86TH6|1|AaCryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.551439
96SKF|1|AaCryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.951385