NR_all_41610.14

Members (24)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	6TPQ\|1\|U (rep)	Large subunit ribosomal RNA	pre-23S rRNA	Bacillus subtilis	Bacteria	RF02541	RNase M5 bound to 50S ribosome with precursor 5S rRNA	Electron microscopy	3.07	2020-09-30
2	7AQD\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Structure of the bacterial RQC complex (Translocating State)	Electron microscopy	3.1	2020-11-25
3	7AQC\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Structure of the bacterial RQC complex (Decoding State)	Electron microscopy	2.99	2020-11-25
4	6TNN\|1\|U	Large subunit ribosomal RNA	pre-23S rRNA	Bacillus subtilis	Bacteria	RF02541	Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA	Electron microscopy	3.07	2020-09-30
5	7AS8\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO	Electron microscopy	2.9	2020-12-09
6	6HA1\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis	Bacteria	RF02541	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin	Electron microscopy	3.1	2018-08-29
7	7O5B\|1\|X	Large subunit ribosomal RNA	23S rRNA (2887-MER)	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound	Electron microscopy	3.33	2022-02-02
8	7OPE\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)	Electron microscopy	3.2	2021-07-21
9	7QV1\|1\|V	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis collided disome (Leading 70S)	Electron microscopy	3.5	2022-03-09
10	7QV2\|1\|V	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis collided disome (Collided 70S)	Electron microscopy	3.5	2022-03-09
11	7AS9\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.	Electron microscopy	3.5	2020-12-23
12	6HA8\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis	Bacteria	RF02541	Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome	Electron microscopy	3.5	2018-08-29
13	7SAE\|1\|A	Large subunit ribosomal RNA	RNA (2434-MER)	Bacillus subtilis	Bacteria	RF02541	44SR70P Class1 ribosomal particle	Electron microscopy	3	2022-03-02
14	5NJT\|1\|U	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis	Bacteria	RF02541	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.	Electron microscopy	3.8	2017-06-14
15	3J9W\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis	Bacteria	RF02541	Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex	Electron microscopy	3.9	2015-04-29
16	7S9U\|1\|A	Large subunit ribosomal RNA	RNA (2436-MER)	Bacillus subtilis	Bacteria	RF02541	44SR3C ribosomal particle	Electron microscopy	3.2	2022-03-02
17	6PPF\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis	Bacteria	RF02541	Bacterial 45SRbgA ribosomal particle class B	Electron microscopy	3.4	2019-09-18
18	6PVK\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis	Bacteria	RF02541	Bacterial 45SRbgA ribosomal particle class A	Electron microscopy	3.4	2019-09-18
19	6HTQ\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis	Bacteria	RF02541	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome	Electron microscopy	4.5	2019-10-23
20	6PPK\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis	Bacteria	RF02541	RbgA+45SRbgA complex	Electron microscopy	4.4	2019-09-18
21	7QV3\|1\|V	Large subunit ribosomal RNA	23S ribosomal RNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)	Electron microscopy	5.14	2022-03-09
22	7ASA\|1\|A	Large subunit ribosomal RNA	23S rRNA	Bacillus subtilis subsp. subtilis str. 168	Bacteria	RF02541	Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO	Electron microscopy	3.5	2020-12-23
23	3J3W\|1\|A	Large subunit ribosomal RNA	ribosome RNA 23S	Bacillus subtilis	Bacteria	RF02541	Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)	Electron microscopy	10.7	2013-06-12
24	3J3V\|1\|A	Large subunit ribosomal RNA	ribosome RNA 23S	Bacillus subtilis	Bacteria	RF02541	Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)	Electron microscopy	13.3	2013-06-12

Release history

Release	3.221
Date	2022-03-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_41610.14	NR_all_41610.13	3.221	(21) 6HA8\|1\|A, 7ASA\|1\|A, 7AS9\|1\|A, 6HA1\|1\|A, 7AS8\|1\|A, 5NJT\|1\|U, 7AQD\|1\|A, 3J9W\|1\|BA, 7AQC\|1\|A, 3J3W\|1\|A, 6TPQ\|1\|U, 3J3V\|1\|A, 6TNN\|1\|U, 7SAE\|1\|A, 6PVK\|1\|A, 7S9U\|1\|A, 6PPK\|1\|A, 7OPE\|1\|A, 6PPF\|1\|A, 7O5B\|1\|X, 6HTQ\|1\|A	(3) 7QV2\|1\|V, 7QV1\|1\|V, 7QV3\|1\|V	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_41610.14	NR_all_41610.15	3.222	(24) 6TNN\|1\|U, 7OPE\|1\|A, 3J9W\|1\|BA, 6PVK\|1\|A, 7O5B\|1\|X, 3J3W\|1\|A, 6PPK\|1\|A, 7ASA\|1\|A, 3J3V\|1\|A, 6PPF\|1\|A, 7AS9\|1\|A, 7SAE\|1\|A, 6HTQ\|1\|A, 7AS8\|1\|A, 7S9U\|1\|A, 6HA8\|1\|A, 7AQD\|1\|A, 7QV3\|1\|V, 6HA1\|1\|A, 7AQC\|1\|A, 7QV2\|1\|V, 6TPQ\|1\|U, 7QV1\|1\|V, 5NJT\|1\|U	(0)	(2) 7QH4\|1\|A, 7QGU\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3J3W\|1\|A	Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)	ELECTRON MICROSCOPY	10.7	2685
2	3J3V\|1\|A	Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)	ELECTRON MICROSCOPY	13.3	2884
3	6TPQ\|1\|U	RNase M5 bound to 50S ribosome with precursor 5S rRNA	ELECTRON MICROSCOPY	3.07	2924
4	6TNN\|1\|U	Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA	ELECTRON MICROSCOPY	3.07	2930
5	7SAE\|1\|A	44SR70P Class1 ribosomal particle	ELECTRON MICROSCOPY	3	2434
6	7S9U\|1\|A	44SR3C ribosomal particle	ELECTRON MICROSCOPY	3.2	2436
7	6PVK\|1\|A	Bacterial 45SRbgA ribosomal particle class A	ELECTRON MICROSCOPY	3.4	2169
8	6PPF\|1\|A	Bacterial 45SRbgA ribosomal particle class B	ELECTRON MICROSCOPY	3.4	2471
9	7QV2\|1\|V	Bacillus subtilis collided disome (Collided 70S)	ELECTRON MICROSCOPY	3.5	2887
10	7AS9\|1\|A	Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.	ELECTRON MICROSCOPY	3.5	2812
11	7QV1\|1\|V	Bacillus subtilis collided disome (Leading 70S)	ELECTRON MICROSCOPY	3.5	2887
12	7QV3\|1\|V	Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)	ELECTRON MICROSCOPY	5.14	2887
13	6PPK\|1\|A	RbgA+45SRbgA complex	ELECTRON MICROSCOPY	4.4	2658
14	7AQC\|1\|A	Structure of the bacterial RQC complex (Decoding State)	ELECTRON MICROSCOPY	2.99	2820
15	7AQD\|1\|A	Structure of the bacterial RQC complex (Translocating State)	ELECTRON MICROSCOPY	3.1	2918
16	3J9W\|1\|BA	Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex	ELECTRON MICROSCOPY	3.9	2923
17	5NJT\|1\|U	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.	ELECTRON MICROSCOPY	3.8	2923
18	6HA8\|1\|A	Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome	ELECTRON MICROSCOPY	3.5	2887
19	7O5B\|1\|X	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound	ELECTRON MICROSCOPY	3.33	2887
20	6HTQ\|1\|A	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome	ELECTRON MICROSCOPY	4.5	2887
21	6HA1\|1\|A	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin	ELECTRON MICROSCOPY	3.1	2887
22	7OPE\|1\|A	RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)	ELECTRON MICROSCOPY	3.2	2814
23	7AS8\|1\|A	Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO	ELECTRON MICROSCOPY	2.9	2812
24	7ASA\|1\|A	Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO	ELECTRON MICROSCOPY	3.5	82

Equivalence class NR_all_41610.14 Obsolete

Release history

Parents

Children