Equivalence class NR_all_41610.5 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6HA1|1|A (rep) | 23S ribosomal RNA | Bacillus subtilis | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2018-08-29 |
| 2 | 6HA8|1|A | 23S rRNA | Bacillus subtilis | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2018-08-29 |
| 3 | 5NJT|1|U | 23S ribosomal RNA | Bacillus subtilis | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 2017-06-14 |
| 4 | 3J9W|1|BA | 23S ribosomal RNA | Bacillus subtilis | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 2015-04-29 |
| 5 | 6PPF|1|A | 23S rRNA | Bacillus subtilis | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2019-09-18 |
| 6 | 6PVK|1|A | 23S rRNA | Bacillus subtilis | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2019-09-18 |
| 7 | 6PPK|1|A | 23S rRNA | Bacillus subtilis | RbgA+45SRbgA complex | ELECTRON MICROSCOPY | 4.4 | 2019-09-18 |
| 8 | 3J3W|1|A | ribosome RNA 23S | Bacillus subtilis | Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a) | ELECTRON MICROSCOPY | 10.7 | 2013-06-12 |
| 9 | 3J3V|1|A | ribosome RNA 23S | Bacillus subtilis | Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a) | ELECTRON MICROSCOPY | 13.3 | 2013-06-12 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| # | Class_IFE | PDBID | Assembly | LSU_23S | LSU_5S | mRNA | tRNA/s | tRNA_Occupancy | A_tRNA_anticodon | Protein_factors |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J3W|1|A | Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a) | ELECTRON MICROSCOPY | 10.7 | 2685 | |||||
| 2 | 6HA1|1|A | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2887 | |||||
| 3 | 6HA8|1|A | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2887 | |||||
| 4 | 5NJT|1|U | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 2923 | |||||
| 5 | 3J9W|1|BA | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 2923 | |||||
| 6 | 6PPK|1|A | RbgA+45SRbgA complex | ELECTRON MICROSCOPY | 4.4 | 2658 | |||||
| 7 | 6PPF|1|A | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2471 | |||||
| 8 | 6PVK|1|A | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2169 | |||||
| 9 | 3J3V|1|A | Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a) | ELECTRON MICROSCOPY | 13.3 | 2884 |