BGSU RNA Site //

Equivalence class NR_all_41610.8 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16TPQ|1|U (rep)Large subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.072020-09-30
27AQD|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
37AQC|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
46TNN|1|ULarge subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.072020-09-30
56HA1|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
66HA8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
75NJT|1|ULarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
83J9W|1|BALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29
96PPF|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18
106PVK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class AElectron microscopy3.42019-09-18
116HTQ|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeElectron microscopy4.52019-10-23
126PPK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541RbgA+45SRbgA complexElectron microscopy4.42019-09-18
133J3W|1|ALarge subunit ribosomal RNAribosome RNA 23SBacillus subtilisBacteriaRF02541Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)Electron microscopy10.72013-06-12
143J3V|1|ALarge subunit ribosomal RNAribosome RNA 23SBacillus subtilisBacteriaRF02541Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)Electron microscopy13.32013-06-12

Release history

Release3.1543.155
Date2020-11-252020-12-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_41610.8NR_all_41610.73.154(12) 6PVK|1|A, 6PPK|1|A, 6PPF|1|A, 6HTQ|1|A, 6HA8|1|A, 6HA1|1|A, 5NJT|1|U, 3J9W|1|BA, 3J3W|1|A, 3J3V|1|A, 6TPQ|1|U, 6TNN|1|U(2) 7AQC|1|A, 7AQD|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_41610.8NR_all_41610.93.156(14) 6TNN|1|U, 6PVK|1|A, 6PPK|1|A, 6PPF|1|A, 6HTQ|1|A, 6HA8|1|A, 6HA1|1|A, 5NJT|1|U, 3J9W|1|BA, 3J3W|1|A, 3J3V|1|A, 7AQD|1|A, 7AQC|1|A, 6TPQ|1|U(0) (1) 7AS8|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J3W|1|AAtomic model of the immature 50S subunit from Bacillus subtilis (state II-a)ELECTRON MICROSCOPY10.72685
26PVK|1|ABacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42169
36PPF|1|ABacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42471
46TPQ|1|URNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072924
56TNN|1|UMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072930
66PPK|1|ARbgA+45SRbgA complexELECTRON MICROSCOPY4.42658
75NJT|1|UStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82923
83J9W|1|BACryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92923
97AQD|1|AStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.12918
107AQC|1|AStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.992820
116HTQ|1|AStringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.52887
126HA1|1|ACryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12887
136HA8|1|ACryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52887
143J3V|1|AAtomic model of the immature 50S subunit from Bacillus subtilis (state I-a)ELECTRON MICROSCOPY13.32884
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