Equivalence class NR_all_41742.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7KGB|1|B (rep) | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | Electron microscopy | 2.7 | 2022-01-19 |
| 2 | 7MT7|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P and E site tRNAs | Electron microscopy | 2.71 | 2022-02-02 |
| 3 | 7MT2|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S initiation complex | Electron microscopy | 2.76 | 2022-02-02 |
| 4 | 7MSM|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | Electron microscopy | 2.79 | 2022-02-02 |
| 5 | 7MT3|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P/E tRNA | Electron microscopy | 2.8 | 2022-02-02 |
| 6 | 7S0S|1|i | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | Electron microscopy | 3.05 | 2022-03-30 |
| 7 | 7MSC|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | Electron microscopy | 2.97 | 2022-02-02 |
| 8 | 5XYM|1|B | 5S ribosomal RNA | 5S RNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Large subunit of Mycobacterium smegmatis | Electron microscopy | 3.08 | 2017-09-27 |
| 9 | 7MSZ|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | Electron microscopy | 3.1 | 2022-02-02 |
| 10 | 5O60|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | Electron microscopy | 3.18 | 2017-07-12 |
| 11 | 7MSH|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | Electron microscopy | 3.23 | 2022-02-02 |
| 12 | 6DZP|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | Electron microscopy | 3.42 | 2018-10-03 |
| 13 | 6DZI|1|B | 5S ribosomal RNA | 5S RNA (118-MER) | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | Electron microscopy | 3.46 | 2018-09-26 |
| 14 | 7F0D|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycobacterium tuberculosis H37Ra | Bacteria | RF00001 | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | Electron microscopy | 3.3 | 2022-06-29 |
Release history
| Release | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5XYM|1|B | Large subunit of Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.08 | 116 |
| 2 | 6DZP|1|B | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.42 | 118 |
| 3 | 6DZI|1|B | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | ELECTRON MICROSCOPY | 3.46 | 118 |
| 4 | 5O60|1|B | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.18 | 118 |
| 5 | 7S0S|1|i | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.05 | 118 |
| 6 | 7MSC|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | ELECTRON MICROSCOPY | 2.97 | 115 |
| 7 | 7MSH|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | ELECTRON MICROSCOPY | 3.23 | 115 |
| 8 | 7MT3|1|B | Mtb 70S with P/E tRNA | ELECTRON MICROSCOPY | 2.8 | 115 |
| 9 | 7MT2|1|B | Mtb 70S initiation complex | ELECTRON MICROSCOPY | 2.76 | 115 |
| 10 | 7MT7|1|B | Mtb 70S with P and E site tRNAs | ELECTRON MICROSCOPY | 2.71 | 115 |
| 11 | 7MSM|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | ELECTRON MICROSCOPY | 2.79 | 115 |
| 12 | 7MSZ|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | ELECTRON MICROSCOPY | 3.1 | 115 |
| 13 | 7KGB|1|B | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | ELECTRON MICROSCOPY | 2.7 | 115 |
| 14 | 7F0D|1|B | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | ELECTRON MICROSCOPY | 3.3 | 115 |