#IFECompound(s)RNA source organismTitleMethodResolutionDate
13TD1|1|B+ 3TD1|1|A (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.12011-12-07
21YRJ|1|A+ 1YRJ|1|BBacterial 16 S Ribosomal RNA A Site OligonucleotideCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.72005-06-07
32ESI|1|A+ 2ESI|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION32005-12-20
44PDQ|1|A+ 4PDQ|1|BRNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION32015-01-07
52F4T|1|B+ 2F4T|1|A5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-RAY DIFFRACTION32006-05-02
62O3V|1|A+ 2O3V|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33X-RAY DIFFRACTION2.82007-11-06
72O3Y|1|A+ 2O3Y|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in Presence of Paromamine Derivative NB30X-RAY DIFFRACTION2.72007-11-06
83BNS|1|A+ 3BNS|1|BA site of human mitochondrial ribosome, chain three, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.92008-06-24
92G5K|1|A+ 2G5K|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with ApramycinX-RAY DIFFRACTION2.82006-06-20
103BNR|1|A+ 3BNR|1|BA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.12008-06-24
112O3W|1|A+ 2O3W|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycinX-RAY DIFFRACTION2.82007-11-06
123BNQ|1|A+ 3BNQ|1|BA site of human mitochondrial ribosome, A chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION22008-06-24
134GPY|1|A+ 4GPY|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.82013-04-03
142FQN|1|A+ 2FQN|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-RAY DIFFRACTION2.32006-02-14
154GPW|1|A+ 4GPW|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION32013-04-03
163TD0|1|B+ 3TD0|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-RAY DIFFRACTION1.62011-12-07
174K31|1|B+ 4K31|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of apramycin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION1.412013-07-31
183BNR|1|C+ 3BNR|1|DA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.12008-06-24
193BNS|1|C+ 3BNS|1|DA site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.92008-06-24
203BNQ|1|C+ 3BNQ|1|DA site of human mitochondrial ribosome, A chain, A site of human mitochondrial ribosome, B chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION22008-06-24
211LC4|1|A+ 1LC4|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.542003-04-08
223WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.32014-11-05
234WCQ|1|A+ 4WCQ|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.12015-09-09
244WCS|1|A+ 4WCS|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.12015-09-09
252O3X|1|A+ 2O3X|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30X-RAY DIFFRACTION2.92007-11-06
264WCR|1|A+ 4WCR|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.52015-09-09
274K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.52013-07-31
284GPX|1|A+ 4GPX|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.62013-04-03
294P20|1|A+ 4P20|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structures of the bacterial ribosomal decoding site complexed with amikacinX-RAY DIFFRACTION2.72014-05-07

Release history

Release2.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.73
Date2015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-29

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_43554.3NR_1.5_43554.42.74(1) 4K31|1|B+4K31|1|C(28) 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4P20|1|A+4P20|1|B, 4WCS|1|A+4WCS|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4WCR|1|A+4WCR|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4WCQ|1|A+4WCQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4PDQ|1|A+4PDQ|1|B(0)
NR_all_43554.3NR_2.0_43554.42.74(6) 3BNS|1|C+3BNS|1|D, 3BNQ|1|A+3BNQ|1|B, 3BNQ|1|C+3BNQ|1|D, 3TD0|1|B+3TD0|1|A, 3BNS|1|A+3BNS|1|B, 4K31|1|B+4K31|1|C(23) 2O3V|1|A+2O3V|1|B, 2O3W|1|A+2O3W|1|B, 3BNR|1|A+3BNR|1|B, 3BNR|1|C+3BNR|1|D, 4GPW|1|A+4GPW|1|B, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4PDQ|1|A+4PDQ|1|B, 4WCS|1|A+4WCS|1|B, 1LC4|1|A+1LC4|1|B, 2F4T|1|B+2F4T|1|A, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B(0)
NR_all_43554.3NR_2.5_43554.42.74(13) 4K32|1|A+4K32|1|B, 3TD0|1|B+3TD0|1|A, 4WCQ|1|A+4WCQ|1|B, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 3BNS|1|C+3BNS|1|D, 2FQN|1|A+2FQN|1|B, 3BNR|1|C+3BNR|1|D, 3BNS|1|A+3BNS|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|A+3BNR|1|B(16) 4PDQ|1|A+4PDQ|1|B, 4GPW|1|A+4GPW|1|B, 1YRJ|1|A+1YRJ|1|B, 2O3V|1|A+2O3V|1|B, 2O3Y|1|A+2O3Y|1|B, 1LC4|1|A+1LC4|1|B, 4P20|1|A+4P20|1|B, 2G5K|1|A+2G5K|1|B, 4WCS|1|A+4WCS|1|B, 4GPY|1|A+4GPY|1|B, 2F4T|1|B+2F4T|1|A, 2O3X|1|A+2O3X|1|B, 4WCR|1|A+4WCR|1|B, 4GPX|1|A+4GPX|1|B, 2ESI|1|A+2ESI|1|B, 2O3W|1|A+2O3W|1|B(1) 4P3S|1|B+4P3S|1|A
NR_all_43554.3NR_20.0_43554.42.74(29) 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCS|1|A+4WCS|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4WCQ|1|A+4WCQ|1|B(0) (1) 4P3S|1|B+4P3S|1|A
NR_all_43554.3NR_3.0_43554.42.74(27) 3BNQ|1|A+3BNQ|1|B, 3BNR|1|A+3BNR|1|B, 3BNS|1|A+3BNS|1|B, 3TD0|1|B+3TD0|1|A, 3WRU|1|A+3WRU|1|B, 4GPX|1|A+4GPX|1|B, 4K31|1|B+4K31|1|C, 4P20|1|A+4P20|1|B, 4WCQ|1|A+4WCQ|1|B, 1LC4|1|A+1LC4|1|B, 2ESI|1|A+2ESI|1|B, 2FQN|1|A+2FQN|1|B, 2O3V|1|A+2O3V|1|B, 2O3X|1|A+2O3X|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|C+3BNR|1|D, 3BNS|1|C+3BNS|1|D, 3TD1|1|B+3TD1|1|A, 4GPW|1|A+4GPW|1|B, 4GPY|1|A+4GPY|1|B, 4K32|1|A+4K32|1|B, 4PDQ|1|A+4PDQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2F4T|1|B+2F4T|1|A, 2G5K|1|A+2G5K|1|B, 2O3W|1|A+2O3W|1|B(2) 4WCR|1|A+4WCR|1|B, 4WCS|1|A+4WCS|1|B(1) 4P3S|1|B+4P3S|1|A
NR_all_43554.3NR_3.5_43554.42.74(29) 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCS|1|A+4WCS|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCR|1|A+4WCR|1|B(0) (1) 4P3S|1|B+4P3S|1|A
NR_all_43554.3NR_4.0_43554.42.74(29) 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4PDQ|1|A+4PDQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCS|1|A+4WCS|1|B, 1LC4|1|A+1LC4|1|B, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCR|1|A+4WCR|1|B, 2F4T|1|B+2F4T|1|A, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B(0) (1) 4P3S|1|B+4P3S|1|A
NR_all_43554.3NR_all_43554.42.74(29) 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4WCR|1|A+4WCR|1|B, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4WCQ|1|A+4WCQ|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4PDQ|1|A+4PDQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 4WCS|1|A+4WCS|1|B, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B(0) (1) 4P3S|1|B+4P3S|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength