Equivalence class NR_all_45043.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 2014-11-19 | |||
| 2 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-ray diffraction | 2.88 | 2019-06-05 | |||
| 3 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-ray diffraction | 3.08 | 2019-06-05 | |||
| 4 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-ray diffraction | 3.24 | 2019-06-05 | |||
| 5 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 2014-11-19 | |||
| 6 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') | Influenza B virus | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 2016-12-21 | |||
| 7 | 5MSG|1|V+ 5MSG|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3') | Influenza B virus | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-ray diffraction | 3.8 | 2017-02-08 | |||
| 8 | 6QCS|1|V+ 6QCS|1|R | 5 end, 3 end | Influenza B virus | Influenza B polymerase pre-initiation complex | Electron microscopy | 3.1 | 2019-06-05 | |||
| 9 | 6F5O|1|V+ 6F5O|1|R | 5' promoter vRNA, 3' promoter vRNA | Influenza B virus | A mechanism for the activation of the influenza virus transcriptase | Electron microscopy | 9.8 | 2018-06-27 |
Release history
| Release | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_45043.2 | NR_all_45043.1 | 3.99 | (9) 4WRT|1|V+4WRT|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 5M3J|1|V+5M3J|1|R, 6F5O|1|V+6F5O|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 4WSA|1|V+4WSA|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 5MSG|1|V+5MSG|1|R, 6QCS|1|V+6QCS|1|R | (0) | (1) 6QCT|1|V |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_45043.2 | NR_all_45043.3 | 3.122 | (9) 6F5O|1|V+6F5O|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R | (0) | (1) 6T0N|1|V+6T0N|1|R |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6QCV|1|V+6QCV|1|R+6QCV|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-RAY DIFFRACTION | 3.24 | 14 |
| 2 | 6QCX|1|V+6QCX|1|R+6QCX|1|M | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-RAY DIFFRACTION | 3.08 | 14 |
| 3 | 6QCW|1|V+6QCW|1|R+6QCW|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-RAY DIFFRACTION | 2.88 | 14 |
| 4 | 5MSG|1|V+5MSG|1|R | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-RAY DIFFRACTION | 3.8 | 14 |
| 5 | 5M3J|1|V+5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 14 |
| 6 | 4WSA|1|V+4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 14 |
| 7 | 6F5O|1|V+6F5O|1|R | A mechanism for the activation of the influenza virus transcriptase | ELECTRON MICROSCOPY | 9.8 | 14 |
| 8 | 6QCS|1|V+6QCS|1|R | Influenza B polymerase pre-initiation complex | ELECTRON MICROSCOPY | 3.1 | 14 |
| 9 | 4WRT|1|V+4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 14 |