Equivalence class NR_all_45472.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q97|1|4 (rep) | Transfer-messenger RNA | transfer-messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2019-03-13 |
| 2 | 6Q98|1|4 | Transfer-messenger RNA | transfer-messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome | Electron microscopy | 4.3 | 2019-02-27 |
| 3 | 3IZ4|1|A | Transfer-messenger RNA | Modified E. coli transfer-messenger RNA | Escherichia coli | Bacteria | RF00023 | Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB | Electron microscopy | 13.6 | 2010-10-20 |
| 4 | 4V6T|1|AV | Transfer-messenger RNA | full length transfer messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | Electron microscopy | 8.3 | 2014-07-09 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6Q97|1|4 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 334 |
| 2 | 4V6T|1|AV | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | ELECTRON MICROSCOPY | 8.3 | 331 |
| 3 | 6Q98|1|4 | Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 4.3 | 363 |
| 4 | 3IZ4|1|A | Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB | ELECTRON MICROSCOPY | 13.6 | 377 |