#IFECompound(s)RNA source organismTitleMethodResolutionDate
15VYC|1|i2 (rep)Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
25VYC|1|i3Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
35VYC|1|i5Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
45VYC|1|i1Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
55VYC|1|i6Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
65VYC|1|i4Human 18S ribosomal RNAHomo sapiensCrystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
76ZMI|1|S218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.62020-08-19
86ZM7|1|S218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.72020-07-29
96ZLW|1|218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitELECTRON MICROSCOPY2.62020-07-29
106ZVH|1|218S rRNAHomo sapiensEDF1-ribosome complexELECTRON MICROSCOPY2.92020-08-19
116Z6N|1|S218S rRNAHomo sapiensCryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.92020-07-29
126ZOJ|1|218S ribosomal RNAHomo sapiensSARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.82020-07-22
136ZP4|1|218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.92020-07-29
146ZXG|1|2pre-18S ribosomal RNACryo-EM structure of a late human pre-40S ribosomal subunit - State H1ELECTRON MICROSCOPY2.62020-12-02
156QZP|1|S218S rRNA (1740-MER)Homo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92019-04-24
166ZME|1|S218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY32020-08-12
176Z6L|1|S218S rRNAHomo sapiensCryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY32020-07-29
186ZV6|1|218S ribosomal RNAHuman RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)ELECTRON MICROSCOPY2.92021-05-12
196EK0|1|S218S ribosomal RNAHomo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92018-01-24
206ZON|1|218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1ELECTRON MICROSCOPY32020-07-29
216ZXH|1|2pre-18S ribosomal RNACryo-EM structure of a late human pre-40S ribosomal subunit - State H2ELECTRON MICROSCOPY2.72020-12-16
227K5I|1|240S ribosomal rRNA18SHomo sapiensSARS-COV-2 nsp1 in complex with human 40S ribosomeELECTRON MICROSCOPY2.92020-10-14
236ZMO|1|S218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.12020-08-19
246Z6M|1|S218S rRNAHomo sapiensCryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.12020-07-29
256ZXE|1|2pre-18S ribosomal RNACryo-EM structure of a late human pre-40S ribosomal subunit - State F2ELECTRON MICROSCOPY32020-12-02
266Y2L|1|S218S ribosomal RNAHomo sapiensStructure of human ribosome in POST stateELECTRON MICROSCOPY32020-04-15
276ZUO|1|2pre-18S ribosomal RNAHuman RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)ELECTRON MICROSCOPY3.12021-05-12
286XA1|1|S218S rRNAHomo sapiensStructure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.82020-10-07
296OM0|1|S218S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
306OLE|1|S218S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
316ZN5|1|218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2ELECTRON MICROSCOPY3.22020-07-29
326ZXD|1|2pre-18S ribosomal RNACryo-EM structure of a late human pre-40S ribosomal subunit - State F1ELECTRON MICROSCOPY3.22020-12-02
336Y0G|1|S218S ribosomal RNAHomo sapiensStructure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.22020-04-15
346ZMT|1|218S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexELECTRON MICROSCOPY32020-08-19
357A09|1|218S ribosomal RNAHomo sapiensStructure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.52020-10-14
366OLG|1|B118S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.42019-06-19
376OLI|1|S218S ribosomal RNAHomo sapiensStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.52019-06-19
386ZMW|1|A18S rRNAHomo sapiensStructure of a human 48S translational initiation complexELECTRON MICROSCOPY3.72020-09-23
396Y57|1|S218S ribosomal RNAHomo sapiensStructure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.52020-04-15
406ZVJ|1|218S ribosomal RNAHomo sapiensStructure of a human ABCE1-bound 43S pre-initiation complex - State IIELECTRON MICROSCOPY3.82020-10-07
416G18|1|2pre-18S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.62018-06-06
426G5I|1|218S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.52018-06-06
434UG0|1|S218S ribosomal RNAHomo sapiensSTRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.62015-06-10
446ZXF|1|2pre-18S ribosomal RNACryo-EM structure of a late human pre-40S ribosomal subunit - State GELECTRON MICROSCOPY3.72020-12-02
456IP8|1|2m18S ribosomal RNAHomo sapiensCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.92019-05-29
466IP5|1|2m18S ribosomal RNAHomo sapiensCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.92019-05-29
476G5H|1|218S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.62018-06-06
486ZOK|1|218S ribosomal RNAHomo sapiensSARS-CoV-2-Nsp1-40S complex, focused on bodyELECTRON MICROSCOPY2.82020-07-29
496OM7|1|S218S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.72019-06-19
506OLZ|1|B118S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.92019-06-19
515AJ0|1|B118S ribosomal RNAHomo sapiensCryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.52015-05-20
526OLF|1|S218S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.92019-06-19
535A2Q|1|218S RRNAHomo sapiensStructure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.92015-07-15
546YBW|1|A18S rRNAHomo sapiensStructure of a human 48S translational initiation complex - 40S bodyELECTRON MICROSCOPY3.12020-09-16
556G51|1|218S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.12018-06-06
566G4S|1|2pre-18S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY42018-06-06
576IP6|1|2m18S ribosomal RNAHomo sapiensCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.52019-05-29
585OA3|1|218S ribosomal RNAHomo sapiensHuman 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.22017-08-09
595LKS|1|S218S ribosomal RNAHomo sapiensStructure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.62017-04-26
606G53|1|218S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.52018-06-06
616G4W|1|218S ribosomal RNAHomo sapiensCryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.52018-06-06
624V6X|1|B218S ribosomal RNAHomo sapiensStructure of the human 80S ribosomeELECTRON MICROSCOPY52014-07-09
636ZOL|1|218S ribosomal RNAHomo sapiensSARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.82020-07-22
645T2C|1|AA18S rRNAHomo sapiensCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.62017-01-25
656FEC|1|A18S ribosomal RNAHomo sapiensHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.32018-03-14
665A8L|1|BHUMAN 18S RIBOSOMAL RNAHomo sapiensHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.82015-12-02

Release history

Release3.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.189
Date2021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-28

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
26OM7|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.71680
36G18|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
46ZXE|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2ELECTRON MICROSCOPY31645
56G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
66ZUO|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)ELECTRON MICROSCOPY3.11665
76ZXD|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1ELECTRON MICROSCOPY3.21645
86ZMT|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexELECTRON MICROSCOPY31569
96ZP4|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.91721
107A09|1|2Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.51721
117K5I|1|2SARS-COV-2 nsp1 in complex with human 40S ribosomeELECTRON MICROSCOPY2.91665
126ZLW|1|2SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitELECTRON MICROSCOPY2.61665
136ZOL|1|2SARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.8472
146ZN5|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2ELECTRON MICROSCOPY3.21671
156ZXH|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2ELECTRON MICROSCOPY2.71577
166ZXG|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1ELECTRON MICROSCOPY2.61577
176ZXF|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State GELECTRON MICROSCOPY3.71656
186ZV6|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)ELECTRON MICROSCOPY2.91681
196G5H|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
205OA3|1|2Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.21661
216ZOJ|1|2SARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.81704
226ZOK|1|2SARS-CoV-2-Nsp1-40S complex, focused on bodyELECTRON MICROSCOPY2.81232
236ZON|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1ELECTRON MICROSCOPY31721
246ZVJ|1|2Structure of a human ABCE1-bound 43S pre-initiation complex - State IIELECTRON MICROSCOPY3.81720
255A2Q|1|2Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
266YBW|1|AStructure of a human 48S translational initiation complex - 40S bodyELECTRON MICROSCOPY3.11196
276ZMW|1|AStructure of a human 48S translational initiation complexELECTRON MICROSCOPY3.71691
286Z6M|1|S2Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.11740
294V6X|1|B2Structure of the human 80S ribosomeELECTRON MICROSCOPY51861
305VYC|1|i6Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
315VYC|1|i5Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
325VYC|1|i3Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
335VYC|1|i4Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
345VYC|1|i2Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
355VYC|1|i1Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
366FEC|1|AHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.31776
375AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
386OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
396OLZ|1|B1Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.91708
406Y57|1|S2Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.51658
416Y0G|1|S2Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.21697
426OLF|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.91680
436OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
446OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51680
456Y2L|1|S2Structure of human ribosome in POST stateELECTRON MICROSCOPY31713
466XA1|1|S2Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.81512
476ZVH|1|2EDF1-ribosome complexELECTRON MICROSCOPY2.91740
486QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91707
496EK0|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
506Z6L|1|S2Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY31740
516Z6N|1|S2Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.91740
526ZMO|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.11740
536ZMI|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.61740
546ZM7|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.71740
556ZME|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY31740
565T2C|1|AACryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
574UG0|1|S2STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
585LKS|1|S2Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
596IP5|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.91742
606IP6|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.51742
616IP8|1|2mCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.91742
625A8L|1|BHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
636G4S|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613
646G53|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.51659
656G4W|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.51563
666G51|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.11659