Equivalence class NR_all_51962.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V5R|1|CY (rep) | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 2 | 4V5R|1|AY | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 3 | 4V5L|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 4 | 4V6P|1|AB | Transfer RNA | A site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) | Electron microscopy | 13.5 | 2014-07-09 |
| 5 | 4V6O|1|AB | Transfer RNA | A site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes) | Electron microscopy | 14.7 | 2014-07-09 |
| 6 | 4V5Q|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 7 | 4V5S|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 8 | 4V5P|1|AY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 9 | 4V5Q|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 10 | 4V5S|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 11 | 4V5P|1|CY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 12 | 4V6R|1|AB | Transfer RNA | A site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
| 13 | 4V6N|1|BB | Transfer RNA | A site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) | Electron microscopy | 12.1 | 2014-07-09 |
| 14 | 4V6Q|1|AB | Transfer RNA | A site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_51962.1 | NR_20.0_51962.2 | 2.20 | (14) 4V5P|1|CY, 4V5R|1|CY, 4V6O|1|AB, 4V5P|1|AY, 4V5R|1|AY, 4V6N|1|BB, 4V6R|1|AB, 4V5L|1|AY, 4V5Q|1|CY, 4V5S|1|CY, 4V6Q|1|AB, 4V5Q|1|AY, 4V5S|1|AY, 4V6P|1|AB | (0) | (1) 4YCP|1|B |
| NR_all_51962.1 | NR_3.5_51962.2 | 2.20 | (9) 4V5Q|1|CY, 4V5R|1|AY, 4V5R|1|CY, 4V5S|1|AY, 4V5S|1|CY, 4V5L|1|AY, 4V5P|1|AY, 4V5P|1|CY, 4V5Q|1|AY | (5) 4V6N|1|BB, 4V6R|1|AB, 4V6Q|1|AB, 4V6P|1|AB, 4V6O|1|AB | (1) 4YCP|1|B |
| NR_all_51962.1 | NR_4.0_51962.2 | 2.20 | (9) 4V5S|1|CY, 4V5L|1|AY, 4V5P|1|AY, 4V5P|1|CY, 4V5Q|1|AY, 4V5Q|1|CY, 4V5R|1|AY, 4V5R|1|CY, 4V5S|1|AY | (5) 4V6Q|1|AB, 4V6P|1|AB, 4V6O|1|AB, 4V6N|1|BB, 4V6R|1|AB | (1) 4YCP|1|B |
| NR_all_51962.1 | NR_all_51962.2 | 2.20 | (14) 4V5P|1|CY, 4V5R|1|CY, 4V6O|1|AB, 4V5P|1|AY, 4V5R|1|AY, 4V6N|1|BB, 4V6R|1|AB, 4V5L|1|AY, 4V5Q|1|CY, 4V5S|1|CY, 4V6Q|1|AB, 4V5Q|1|AY, 4V5S|1|AY, 4V6P|1|AB | (0) | (1) 4YCP|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V5P|1|CY | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 |
| 2 | 4V5P|1|AY | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 |
| 3 | 4V5R|1|CY | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 |
| 4 | 4V5R|1|AY | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 |
| 5 | 4V5Q|1|AY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 |
| 6 | 4V5Q|1|CY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 |
| 7 | 4V5S|1|CY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 |
| 8 | 4V5S|1|AY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 |
| 9 | 4V5L|1|AY | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 67 |
| 10 | 4V6N|1|BB | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) | ELECTRON MICROSCOPY | 12.1 | 67 |
| 11 | 4V6P|1|AB | Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) | ELECTRON MICROSCOPY | 13.5 | 67 |
| 12 | 4V6O|1|AB | Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes) | ELECTRON MICROSCOPY | 14.7 | 67 |
| 13 | 4V6R|1|AB | Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) | ELECTRON MICROSCOPY | 11.5 | 67 |
| 14 | 4V6Q|1|AB | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) | ELECTRON MICROSCOPY | 11.5 | 67 |