BGSU RNA Site //

Equivalence class NR_all_56101.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17ZP8|1|v (rep)Transfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with a stalled filamin domain 5 nascent chainElectron microscopy2.22022-08-10
27Z20|1|vTransfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainElectron microscopy2.292022-08-10
37ZOD|1|vTransfer RNAPro-tRNAEscherichia coliBacteriaRF0000570S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaElectron microscopy2.562022-08-10
47O1A|1|B8Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
57O1C|1|B8Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanElectron microscopy2.62021-09-01
67O19|1|B8Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanElectron microscopy2.92021-09-01
76SZS|1|xTransfer RNAP-site tRNA-Pro(CGG), mRNAEscherichia coliBacteriaRF00005Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisElectron microscopy3.062019-12-04
85MGP|1|xTransfer RNAP-site tRNA, mRNAEscherichia coliBacteriaRF00005Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
96ENU|1|xTransfer RNAProline tRNA, mRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
106ENF|1|xTransfer RNAproline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNAEscherichia coliBacteriaRF00005Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
117CPJ|1|9Transfer RNAP/P tRNA, mRNAEscherichia coliBacteriaRF00005ycbZ-stalled 70S ribosomeElectron microscopy3.32021-12-08
126NUO|1|XVTransfer RNAP-site tRNA-Pro, mRNAEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
136NUO|1|QVTransfer RNAP-site tRNA-Pro, mRNAEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
146ENJ|1|xTransfer RNAProline tRNA, mRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
156ENJ|1|9Transfer RNAProline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
166O3M|1|QVTransfer RNAP-site ASLPro, mRNAEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14
176O3M|1|XVTransfer RNAP-site ASLPro, mRNAEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14

Release history

Release3.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.280
Date2022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_56101.4NR_all_56101.33.243(14) 6SZS|1|x, 6O3M|1|XV, 6O3M|1|QV, 6NUO|1|XV, 6NUO|1|QV, 6ENU|1|x, 6ENJ|1|x, 7O1C|1|B8, 6ENJ|1|9, 7O1A|1|B8, 6ENF|1|x, 7O19|1|B8, 5MGP|1|x, 7CPJ|1|9(3) 7ZOD|1|v, 7Z20|1|v, 7ZP8|1|v(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17ZOD|1|v70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaELECTRON MICROSCOPY2.5677
26ENJ|1|9Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
36ENJ|1|xPolyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
46ENU|1|xPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.177
56ENF|1|xCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.277
67CPJ|1|9ycbZ-stalled 70S ribosomeELECTRON MICROSCOPY3.377
75MGP|1|xStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.177
86SZS|1|xRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.0677
97O19|1|B8Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.977
107O1C|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.677
117O1A|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.474
127Z20|1|v70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.2977
136NUO|1|XVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
146O3M|1|XVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
156O3M|1|QVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
166NUO|1|QVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
177ZP8|1|v70S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.276
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