Equivalence class NR_all_56101.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZP8|1|v (rep) | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | Electron microscopy | 2.2 | 76 | 2022-08-10 |
| 2 | 7Z20|1|v | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.29 | 77 | 2022-08-10 |
| 3 | 7ZOD|1|v | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia | Electron microscopy | 2.56 | 77 | 2022-08-10 |
| 4 | 7O1A|1|B8 | Transfer RNA | mRNA, P-site tRNA-Pro | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 77 | 2021-09-01 |
| 5 | 7O1C|1|B8 | Transfer RNA | mRNA, P-site tRNA-Pro | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | Electron microscopy | 2.6 | 77 | 2021-09-01 |
| 6 | 7O19|1|B8 | Transfer RNA | mRNA, P-site tRNA-Pro | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.9 | 77 | 2021-09-01 |
| 7 | 6SZS|1|x | Transfer RNA | mRNA, P-site tRNA-Pro(CGG) | Escherichia coli | Bacteria | RF00005 | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | Electron microscopy | 3.06 | 77 | 2019-12-04 |
| 8 | 5MGP|1|x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 77 | 2016-12-14 |
| 9 | 6ENU|1|x | Transfer RNA | mRNA, Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 77 | 2017-11-22 |
| 10 | 6ENF|1|x | Transfer RNA | proline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 77 | 2017-11-22 |
| 11 | 7CPJ|1|9 | Transfer RNA | mRNA, P/P tRNA | Escherichia coli | Bacteria | RF00005 | ycbZ-stalled 70S ribosome | Electron microscopy | 3.3 | 77 | 2021-12-08 |
| 12 | 6NUO|1|XV | Transfer RNA | mRNA, P-site tRNA-Pro | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 77 | 2020-10-14 |
| 13 | 6NUO|1|QV | Transfer RNA | mRNA, P-site tRNA-Pro | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 77 | 2020-10-14 |
| 14 | 6ENJ|1|x | Transfer RNA | mRNA, Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 77 | 2017-11-22 |
| 15 | 6ENJ|1|9 | Transfer RNA | Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 77 | 2017-11-22 |
| 16 | 6O3M|1|QV | Transfer RNA | mRNA, P-site ASLPro | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 77 | 2020-10-14 |
| 17 | 6O3M|1|XV | Transfer RNA | mRNA, P-site ASLPro | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 77 | 2020-10-14 |
Release history
| Release | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 | 3.374 | 3.375 | 3.376 | 3.377 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 | 2025-02-12 | 2025-02-19 | 2025-02-26 | 2025-03-05 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7ZOD|1|v | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia | ELECTRON MICROSCOPY | 2.56 | 77 | |
| 2 | 6ENJ|1|9 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 | |
| 3 | 6ENJ|1|x | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 | |
| 4 | 6ENU|1|x | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.1 | 77 | |
| 5 | 6ENF|1|x | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 6 | 7CPJ|1|9 | ycbZ-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.3 | 77 | |
| 7 | 5MGP|1|x | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 77 | |
| 8 | 6SZS|1|x | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | ELECTRON MICROSCOPY | 3.06 | 77 | |
| 9 | 7O19|1|B8 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.9 | 77 | |
| 10 | 7O1C|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.6 | 77 | |
| 11 | 7O1A|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.4 | 77 | |
| 12 | 7Z20|1|v | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.29 | 77 | |
| 13 | 6NUO|1|XV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 77 | |
| 14 | 6O3M|1|XV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 | |
| 15 | 6O3M|1|QV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 | |
| 16 | 6NUO|1|QV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 77 | |
| 17 | 7ZP8|1|v | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.2 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: