Equivalence class NR_all_56118.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ASO|1|I (rep) | U6 spliceosomal RNA | Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-ray diffraction | 2.71 | 2018-05-09 |
| 2 | 5VSU|1|I | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T8 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-ray diffraction | 3.1 | 2018-05-09 |
| 3 | 5MPS|1|6 | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 4 | 5YLZ|1|D | U6 spliceosomal RNA | U6 snRNA, mRNA/intron lariat, U2 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
| 5 | 5Y88|1|D | U6 spliceosomal RNA | U6 snRNA, U2 snRNA, Intron lariat | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | Electron microscopy | 3.46 | 2018-08-01 |
| 6 | 5GMK|1|E+ 5GMK|1|L | U6 spliceosomal RNA + U2 splicesomal small nuclear RNA | U6 snRNA, U2 snRNA, Intron_BPS, 5'-Splicing Site | Saccharomyces cerevisiae | Eukarya | RF00026 + RF00004 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 7 | 5WSG|1|E | U6 spliceosomal RNA | Saccharomyces cerevisiae S288c SNR6 snRNA, RNA (91-MER), 3'-intron-lariat, 5'-intron-lariat | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
| 8 | 5LQW|1|6+ 5LQW|1|2 | U6 spliceosomal RNA + U2 splicesomal small nuclear RNA | U6 snRNA, U2 snRNA, actin pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00026 + RF00004 | yeast activated spliceosome | Electron microscopy | 5.8 | 2016-10-05 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_56118.6 | NR_all_56118.5 | 3.33 | (7) 6ASO|1|I, 5YLZ|1|D, 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L | (1) 5Y88|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_56118.6 | NR_all_02335.1 | 3.98 | (1) 5VSU|1|I | (7) 5MPS|1|6, 5Y88|1|D, 6ASO|1|I, 5LQW|1|6+5LQW|1|2, 5WSG|1|E, 5YLZ|1|D, 5GMK|1|E+5GMK|1|L | (0) |
| NR_all_56118.6 | NR_all_56904.1 | 3.98 | (1) 5LQW|1|6+5LQW|1|2 | (7) 5VSU|1|I, 5Y88|1|D, 6ASO|1|I, 5MPS|1|6, 5WSG|1|E, 5YLZ|1|D, 5GMK|1|E+5GMK|1|L | (0) |
| NR_all_56118.6 | NR_all_82055.1 | 3.98 | (1) 6ASO|1|I | (7) 5WSG|1|E, 5YLZ|1|D, 5LQW|1|6+5LQW|1|2, 5VSU|1|I, 5Y88|1|D, 5GMK|1|E+5GMK|1|L, 5MPS|1|6 | (0) |
| NR_all_56118.6 | NR_all_83830.1 | 3.98 | (5) 5MPS|1|6, 5YLZ|1|D, 5WSG|1|E, 5GMK|1|E+5GMK|1|L, 5Y88|1|D | (3) 5VSU|1|I, 5LQW|1|6+5LQW|1|2, 6ASO|1|I | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5LQW|1|6+5LQW|1|2 | yeast activated spliceosome | ELECTRON MICROSCOPY | 5.8 | 102 |
| 2 | 5YLZ|1|D | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 103 |
| 3 | 5WSG|1|E | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 103 |
| 4 | 5GMK|1|E+5GMK|1|L | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 103 |
| 5 | 5Y88|1|D | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | ELECTRON MICROSCOPY | 3.46 | 101 |
| 6 | 5MPS|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 99 |
| 7 | 6ASO|1|I | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 2.71 | 69 |
| 8 | 5VSU|1|I | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 3.1 | 72 |