Equivalence class NR_all_57839.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J92|1|5+ 3J92|1|8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 2015-01-21 |
| 2 | 4D5Y|1|2+ 4D5Y|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 3 | 4D67|1|2+ 4D67|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RRNA, 5.8S RRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 4 | 4UJC|1|A2+ 4UJC|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 2014-07-30 |
| 5 | 4UJE|1|A2+ 4UJE|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 2014-07-16 |
| 6 | 4UJD|1|A2+ 4UJD|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 2014-07-30 |
Release history
| Release | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_57839.3 | NR_all_57839.2 | 2.13 | (4) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3, 3J92|1|5+3J92|1|8 | (2) 4D67|1|2+4D67|1|3, 4D5Y|1|2+4D5Y|1|3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_57839.3 | NR_20.0_57839.4 | 2.35 | (6) 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3, 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3, 4UJD|1|A2+4UJD|1|A3, 3J92|1|5+3J92|1|8 | (0) | (2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8 |
| NR_all_57839.3 | NR_4.0_57839.4 | 2.35 | (1) 3J92|1|5+3J92|1|8 | (5) 4UJC|1|A2+4UJC|1|A3, 4D67|1|2+4D67|1|3, 4D5Y|1|2+4D5Y|1|3, 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3 | (2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8 |
| NR_all_57839.3 | NR_all_57839.4 | 2.35 | (6) 3J92|1|5+3J92|1|8, 4D67|1|2+4D67|1|3, 4UJD|1|A2+4UJD|1|A3, 4D5Y|1|2+4D5Y|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3 | (0) | (2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4D5Y|1|2+4D5Y|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |
| 2 | 4D67|1|2+4D67|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |
| 3 | 4UJD|1|A2+4UJD|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 3616 |
| 4 | 4UJE|1|A2+4UJE|1|A3 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 3616 |
| 5 | 4UJC|1|A2+4UJC|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 3616 |
| 6 | 3J92|1|5+3J92|1|8 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 3662 |