BGSU RNA Site

Equivalence class NR_all_57839.3 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
13J92|1|5+ 3J92|1|8 (rep)28S rRNA, 5.8S rRNAStructure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.62015-01-21
24D5Y|1|2+ 4D5Y|1|328S Ribosomal RNA, 5.8S Ribosomal RNACryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-03-04
34D67|1|2+ 4D67|1|328S RRNA, 5.8S RRNACryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-03-04
44UJC|1|A2+ 4UJC|1|A328S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAmammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.52014-07-30
54UJE|1|A2+ 4UJE|1|A328S Ribosomal RNA, 5.8S Ribosomal RNARegulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.92014-07-16
64UJD|1|A2+ 4UJD|1|A328S Ribosomal RNA, 5.8S Ribosomal RNAmammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.92014-07-30

Release history

Release2.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.34
Date2015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-31

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_57839.3NR_all_57839.22.13(4) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3, 3J92|1|5+3J92|1|8(2) 4D67|1|2+4D67|1|3, 4D5Y|1|2+4D5Y|1|3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_57839.3NR_20.0_57839.42.35(6) 3J92|1|5+3J92|1|8, 4D67|1|2+4D67|1|3, 4UJD|1|A2+4UJD|1|A3, 4D5Y|1|2+4D5Y|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3(0) (2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8
NR_all_57839.3NR_4.0_57839.42.35(1) 3J92|1|5+3J92|1|8(5) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4D5Y|1|2+4D5Y|1|3, 4UJC|1|A2+4UJC|1|A3, 4D67|1|2+4D67|1|3(2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8
NR_all_57839.3NR_all_57839.42.35(6) 4D5Y|1|2+4D5Y|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3, 3J92|1|5+3J92|1|8, 4D67|1|2+4D67|1|3, 4UJD|1|A2+4UJD|1|A3(0) (2) 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14D5Y|1|2+4D5Y|1|3Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY93616
24D67|1|2+4D67|1|3Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY93616
34UJD|1|A2+4UJD|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.93616
44UJE|1|A2+4UJE|1|A3Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.93616
54UJC|1|A2+4UJC|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.53616
63J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662