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Equivalence class NR_all_60049.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13CD6|1|4 (rep)RNA (5'-R(*CP*CP*(PPU))-3')Co-cystal of large Ribosomal Subunit mutant G2616A with CC-PuromycinX-ray diffraction2.752008-05-20
23CMA|1|5RNA (5'-R(*CP*CP*A)-3')The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortuiX-ray diffraction2.82008-09-23
36N9E|1|2wCC-PmnEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolutionX-ray diffraction3.72018-12-12
41VQO|1|45'-R(*CP*CP*(PPU))-3'The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortuiX-ray diffraction2.22005-11-29
51QVG|1|3Oligonucleotide CCAStructure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortuiX-ray diffraction2.92003-11-11
63CME|1|5RNA (5'-R(*C*CP*A)-3')synthetic constructThe Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula MarismortuiX-ray diffraction2.952008-09-23
77Y38|1|ZRNA (5'-R(P*CP*CP*A)-3')in vitro transcription vector pT7-TP(deltai)Molecular architecture of the chikungunya virus replication complexElectron microscopy2.82022-12-14
88OIT|1|B7E-site tRNAHomo sapiens39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.92023-06-14
98OIR|1|B7E-site tRNAHomo sapiens55S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.12023-06-14
105LZD|1|wCCA 3' end of E-site tRNASec (low occupancy)Escherichia coliStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)Electron microscopy3.42016-11-23
118OIQ|1|B7E-site tRNASus scrofa39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy3.52023-06-14
125LZE|1|wCCA 3' end of E-site tRNASec (low occupancy)Escherichia coliStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)Electron microscopy3.52016-11-23
138OIN|1|B7E-site tRNASus scrofa55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.62023-06-14
145LZC|1|wCCA 3' end of E-site tRNASec (low occupancy)Escherichia coliStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)Electron microscopy4.82016-11-23
155LZB|1|wCCA 3' end of E-site tRNASec (low occupancy)Escherichia coliStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)Electron microscopy5.32016-11-23

Release history

Release3.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.322
Date2023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_60049.4NR_all_60049.33.287(11) 3CMA|1|5, 3CD6|1|4, 7Y38|1|Z, 1VQO|1|4, 6N9E|1|2w, 1QVG|1|3, 5LZE|1|w, 5LZD|1|w, 5LZC|1|w, 5LZB|1|w, 3CME|1|5(4) 8OIR|1|B7, 8OIQ|1|B7, 8OIN|1|B7, 8OIT|1|B7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15LZE|1|wStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.53
25LZD|1|wStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.43
35LZC|1|wStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)ELECTRON MICROSCOPY4.83
45LZB|1|wStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)ELECTRON MICROSCOPY5.33
51QVG|1|3Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortuiX-RAY DIFFRACTION2.93
68OIN|1|B755S mammalian mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.63
78OIQ|1|B739S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.53
88OIR|1|B755S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.13
98OIT|1|B739S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.93
107Y38|1|ZMolecular architecture of the chikungunya virus replication complexELECTRON MICROSCOPY2.83
113CMA|1|5The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortuiX-RAY DIFFRACTION2.83
123CD6|1|4Co-cystal of large Ribosomal Subunit mutant G2616A with CC-PuromycinX-RAY DIFFRACTION2.752
131VQO|1|4The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortuiX-RAY DIFFRACTION2.22
143CME|1|5The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula MarismortuiX-RAY DIFFRACTION2.952
156N9E|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolutionX-RAY DIFFRACTION3.72
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