BGSU RNA Site //

Equivalence class NR_all_60443.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17PWO|1|2 (rep)Small subunit ribosomal RNArRNA 18SGiardia lamblia ATCC 50803EukaryaRF01960Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionElectron microscopy2.752022-04-20
27PWF|1|2Small subunit ribosomal RNArRNA 18SGiardia lamblia ATCC 50803EukaryaRF01960Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolutionElectron microscopy2.852022-05-25
38BTR|1|StSmall Subunit rRNAGiardia lamblia ATCC 50803EukaryaGiardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.252023-03-22
48BRM|1|StSmall Subunit rRNAGiardia lamblia ATCC 50803EukaryaGiardia ribosome in POST-T state, no E-site tRNA (A6)Electron microscopy3.332023-03-15
58BR8|1|StSmall Subunit rRNAGiardia lamblia ATCC 50803EukaryaGiardia ribosome in POST-T state (A1)Electron microscopy3.352023-03-15
68BSI|1|StSmall Subunit rRNAGiardia intestinalisGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)Electron microscopy3.42023-03-15
78BTD|1|StSmall Subunit rRNAGiardia lamblia ATCC 50803EukaryaGiardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.92023-03-22
88BSJ|1|StSmall Subunit rRNA, mRNAGiardia intestinalisGiardia Ribosome in PRE-T Classical State (C)Electron microscopy6.492023-03-22

Release history

Release3.2753.2763.2773.2783.2793.280
Date2023-03-222023-03-292023-04-052023-04-122023-04-192023-04-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_60443.1NR_all_61930.13.275(5) 8BSI|1|St, 8BRM|1|St, 8BR8|1|St, 7PWO|1|2, 7PWF|1|2(3) 8BTR|1|St, 8BTD|1|St, 8BSJ|1|St(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PWO|1|2Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionELECTRON MICROSCOPY2.751340
27PWF|1|2Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolutionELECTRON MICROSCOPY2.851340
38BRM|1|StGiardia ribosome in POST-T state, no E-site tRNA (A6)ELECTRON MICROSCOPY3.331454
48BR8|1|StGiardia ribosome in POST-T state (A1)ELECTRON MICROSCOPY3.351454
58BSJ|1|StGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.491454
68BTR|1|StGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.251454
78BTD|1|StGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.91454
88BSI|1|StGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)ELECTRON MICROSCOPY3.41454
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