Equivalence class NR_all_60445.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GNA|1|C+ 8GNA|1|J (rep) | RNA (32-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR complex | Electron microscopy | 2.8 | 2023-01-18 | |||
| 2 | 7X8A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 2.8 | 2022-11-16 | |||
| 3 | 7XC7|1|C+ 7XC7|1|J | RNA (33-MER), RNA (46-mer) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 3.1 | 2022-11-16 | |||
| 4 | 7X7A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | Electron microscopy | 3.2 | 2022-11-16 | |||
| 5 | 8GU6|1|C+ 8GU6|1|J | RNA (33-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | Electron microscopy | 3.1 | 2023-01-18 | |||
| 6 | 7X7R|1|C+ 7X7R|1|J | RNA (36-MER), RNA (5'-R(P*AP*GP*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*G)-3') | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein | Electron microscopy | 3.5 | 2022-11-16 | |||
| 7 | 8D8N|1|C+ 8D8N|1|D | RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*A)-3') | Candidatus Scalindua brodae | gRAMP non-match PFS target RNA | Electron microscopy | 3.6 | 2022-08-31 |
Release history
| Release | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_60445.2 | NR_all_60445.1 | 3.266 | (5) 8D8N|1|C+8D8N|1|D, 7XC7|1|C+7XC7|1|J, 7X8A|1|C, 7X7R|1|C+7X7R|1|J, 7X7A|1|C | (2) 8GU6|1|C+8GU6|1|J, 8GNA|1|C+8GNA|1|J | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_60445.2 | NR_all_21756.1 | 3.287 | (7) 7X7A|1|C, 7XC7|1|C+7XC7|1|J, 8GU6|1|C+8GU6|1|J, 7X8A|1|C, 8GNA|1|C+8GNA|1|J, 7X7R|1|C+7X7R|1|J, 8D8N|1|C+8D8N|1|D | (0) | (5) 8D9E|1|C+8D9E|1|D, 8D9F|1|C, 8D9G|1|C+8D9G|1|D, 8D9I|1|C+8D9I|1|D, 8D9H|1|C+8D9H|1|D |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7XC7|1|C+7XC7|1|J | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 3.1 | 31 |
| 2 | 8GU6|1|C+8GU6|1|J | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | ELECTRON MICROSCOPY | 3.1 | 33 |
| 3 | 8GNA|1|C+8GNA|1|J | Structure of the SbCas7-11-crRNA-NTR complex | ELECTRON MICROSCOPY | 2.8 | 32 |
| 4 | 7X8A|1|C | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 2.8 | 33 |
| 5 | 7X7A|1|C | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | ELECTRON MICROSCOPY | 3.2 | 33 |
| 6 | 7X7R|1|C+7X7R|1|J | Cryo-EM structure of a bacterial protein | ELECTRON MICROSCOPY | 3.5 | 36 |
| 7 | 8D8N|1|C+8D8N|1|D | gRAMP non-match PFS target RNA | ELECTRON MICROSCOPY | 3.6 | 35 |
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