RNA 3D Hub //

Equivalence class NR_all_64918.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16SCE|1|B (rep)cyclic oligoadenylatesynthetic constructStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-ray diffraction1.832020-02-19
26SCF|1|Icyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
36SCF|1|Kcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
46YUD|1|Kcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
56YUD|1|Ocyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
66SCF|1|Mcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
76YUD|1|Pcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
86SCF|1|Lcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
96YUD|1|Mcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
106YUD|1|Qcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
116O6X|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
124BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-ray diffraction2.52012-10-03
136O6X|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
146O7B|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
156O6V|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
166R7B|1|DRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
176R9R|1|DDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
186OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
196OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
206OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
216O6V|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
226OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
236O7B|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
245E02|1|CRNA (5'-R(*AP*AP*AP*A)-3')synthetic constructStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-ray diffraction3.82016-07-06
256R9R|1|EDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
266R7B|1|ERNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
276O7I|1|IRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy3.22019-07-31
286O7H|1|KCyclic DNA cA4synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy2.92019-07-31

Release history

Release3.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.158
Date2020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_64918.5NR_all_64918.43.140(23) 6OV0|1|H, 4BA2|1|R, 6SCF|1|I, 6O7B|1|C, 6OV0|1|G, 6SCE|1|B, 6O6X|1|D, 6OV0|1|F, 6R9R|1|E, 6O6X|1|C, 6OV0|1|E, 6R9R|1|D, 6O6V|1|D, 6SCF|1|M, 6O7I|1|I, 6R7B|1|E, 6O6V|1|C, 6SCF|1|L, 6O7H|1|K, 6R7B|1|D, 5E02|1|C, 6SCF|1|K, 6O7B|1|D(5) 6YUD|1|M, 6YUD|1|O, 6YUD|1|P, 6YUD|1|Q, 6YUD|1|K(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_64918.5NR_all_64918.63.159(28) 6O6V|1|D, 6O7H|1|K, 6OV0|1|H, 6SCF|1|I, 6YUD|1|M, 6O6V|1|C, 6SCE|1|B, 6O7B|1|D, 6YUD|1|K, 6OV0|1|G, 5E02|1|C, 6R9R|1|E, 6O7B|1|C, 6SCF|1|M, 6OV0|1|F, 6YUD|1|Q, 4BA2|1|R, 6R9R|1|D, 6O6X|1|D, 6SCF|1|L, 6OV0|1|E, 6YUD|1|P, 6R7B|1|E, 6O6X|1|C, 6SCF|1|K, 6O7I|1|I, 6YUD|1|O, 6R7B|1|D(0) (3) 6WXX|1|X, 6WXX|1|Y, 6XL1|1|C

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
26OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
36OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
46SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
56SCE|1|BStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.834
66YUD|1|MStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
76YUD|1|QStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
86YUD|1|OStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
96YUD|1|PStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
106YUD|1|KStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
116O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
126O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
136R9R|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.74
146R7B|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.124
156O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
166O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
176O7I|1|ICryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY3.24
186SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
196SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
206SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
216O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
226O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
235E02|1|CStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-RAY DIFFRACTION3.84
244BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
256OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
266R7B|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.122
276OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
286R9R|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72
Copyright 2024 BGSU RNA group. Page generated in 0.3497 s