Equivalence class NR_all_64918.7 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 6SCE|1|B (rep) | cyclic oligoadenylate | synthetic construct | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-ray diffraction | 1.83 | 2020-02-19 | |||
2 | 6XL1|1|C | cA4 | synthetic construct | crystal structure of cA4-activated Cad1(D294N) | X-ray diffraction | 1.95 | 2020-12-30 | |||
3 | 6SCF|1|I | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
4 | 6SCF|1|K | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
5 | 6YUD|1|K | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
6 | 6YUD|1|O | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
7 | 6SCF|1|M | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
8 | 6YUD|1|P | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
9 | 6SCF|1|L | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
10 | 6YUD|1|M | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
11 | 6YUD|1|Q | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
12 | 6O6X|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
13 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 2012-10-03 | |||
14 | 7BDV|1|F | cyclic tetra-adenylate | synthetic construct | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 2.02 | 2021-03-03 | |||
15 | 7BDV|1|H | cyclic tetra-adenylate | synthetic construct | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 2.02 | 2021-03-03 | |||
16 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
17 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
18 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
19 | 6WXX|1|Y | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 2020-12-30 | |||
20 | 6WXX|1|X | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 2020-12-30 | |||
21 | 6R7B|1|D | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 2019-10-02 | |||
22 | 6R9R|1|D | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
23 | 6OV0|1|E | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
24 | 6OV0|1|H | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
25 | 6OV0|1|G | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
26 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
27 | 6OV0|1|F | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
28 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
29 | 5E02|1|C | RNA (5'-R(*AP*AP*AP*A)-3') | synthetic construct | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-ray diffraction | 3.8 | 2016-07-06 | |||
30 | 6R9R|1|E | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
31 | 6R7B|1|E | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 2019-10-02 | |||
32 | 6O7I|1|I | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 3.2 | 2019-07-31 | |||
33 | 6O7H|1|K | Cyclic DNA cA4 | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 2.9 | 2019-07-31 |
Release history
Release | 3.168 |
---|---|
Date | 2021-03-03 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_64918.7 | NR_all_64918.6 | 3.168 | (31) 6O7H|1|K, 6WXX|1|Y, 6O7B|1|D, 6WXX|1|X, 6O7B|1|C, 6SCF|1|M, 6O6X|1|D, 6SCF|1|L, 6O6X|1|C, 6SCF|1|K, 6O6V|1|D, 6SCF|1|I, 6O6V|1|C, 6SCE|1|B, 5E02|1|C, 6R9R|1|E, 4BA2|1|R, 6R9R|1|D, 6R7B|1|E, 6R7B|1|D, 6YUD|1|Q, 6OV0|1|H, 6YUD|1|P, 6OV0|1|G, 6YUD|1|O, 6OV0|1|F, 6YUD|1|M, 6OV0|1|E, 6YUD|1|K, 6O7I|1|I, 6XL1|1|C | (2) 7BDV|1|F, 7BDV|1|H | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_64918.7 | NR_all_64918.8 | 3.169 | (33) 6OV0|1|H, 6YUD|1|P, 6OV0|1|G, 6YUD|1|O, 6OV0|1|F, 6YUD|1|M, 6OV0|1|E, 6YUD|1|K, 6O7I|1|I, 6XL1|1|C, 6O7H|1|K, 6WXX|1|Y, 6O7B|1|D, 6WXX|1|X, 6O7B|1|C, 6SCF|1|M, 6O6X|1|D, 6SCF|1|L, 6O6X|1|C, 6SCF|1|K, 6O6V|1|D, 6SCF|1|I, 6O6V|1|C, 6SCE|1|B, 5E02|1|C, 6R9R|1|E, 4BA2|1|R, 6R9R|1|D, 7BDV|1|H, 6R7B|1|E, 7BDV|1|F, 6R7B|1|D, 6YUD|1|Q | (0) | (1) 6W11|1|C |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
2 | 6SCF|1|L | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
3 | 6SCF|1|K | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
4 | 6SCF|1|M | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
5 | 6XL1|1|C | crystal structure of cA4-activated Cad1(D294N) | X-RAY DIFFRACTION | 1.95 | 4 |
6 | 6WXX|1|Y | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 |
7 | 6WXX|1|X | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 |
8 | 7BDV|1|H | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 2.02 | 4 |
9 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
10 | 6R7B|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 4 |
11 | 6O7I|1|I | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 3.2 | 4 |
12 | 6O7H|1|K | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 2.9 | 4 |
13 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
14 | 6R9R|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 4 |
15 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
16 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
17 | 6YUD|1|K | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
18 | 6YUD|1|P | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
19 | 6YUD|1|O | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
20 | 6YUD|1|Q | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
21 | 6YUD|1|M | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
22 | 6SCE|1|B | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-RAY DIFFRACTION | 1.83 | 4 |
23 | 6SCF|1|I | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
24 | 6OV0|1|H | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
25 | 7BDV|1|F | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 2.02 | 4 |
26 | 6OV0|1|E | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
27 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
28 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 |
29 | 5E02|1|C | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-RAY DIFFRACTION | 3.8 | 4 |
30 | 6OV0|1|F | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |
31 | 6R9R|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 2 |
32 | 6R7B|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 2 |
33 | 6OV0|1|G | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |