Equivalence class NR_all_64918.9 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SCE|1|B (rep) | cyclic oligoadenylate | synthetic construct | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-ray diffraction | 1.83 | 2020-02-19 | |||
| 2 | 6XL1|1|C | cA4 | synthetic construct | crystal structure of cA4-activated Cad1(D294N) | X-ray diffraction | 1.95 | 2020-12-30 | |||
| 3 | 6SCF|1|I | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 4 | 6SCF|1|K | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 5 | 6YUD|1|K | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
| 6 | 6YUD|1|O | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
| 7 | 6SCF|1|M | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 8 | 6YUD|1|P | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
| 9 | 6SCF|1|L | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 10 | 6YUD|1|M | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
| 11 | 6YUD|1|Q | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 2020-08-19 | |||
| 12 | 6W11|1|C | cA4 | Saccharolobus solfataricus | The structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4) | X-ray diffraction | 2.46 | 2021-03-10 | |||
| 13 | 6O6X|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
| 14 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 2012-10-03 | |||
| 15 | 7BDV|1|F | cyclic tetra-adenylate | synthetic construct | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 2.02 | 2021-03-03 | |||
| 16 | 7BDV|1|H | cyclic tetra-adenylate | synthetic construct | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 2.02 | 2021-03-03 | |||
| 17 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
| 18 | 7DID|1|C | RNA (5'-R(*AP*AP*AP*A)-3') | Mycoplasma genitalium G37 | Mycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNA | X-ray diffraction | 1.9 | 2021-03-17 | |||
| 19 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
| 20 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
| 21 | 6WXX|1|Y | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 2020-12-30 | |||
| 22 | 6WXX|1|X | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 2020-12-30 | |||
| 23 | 6R7B|1|D | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 2019-10-02 | |||
| 24 | 6R9R|1|D | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
| 25 | 6OV0|1|E | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 26 | 6OV0|1|H | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 27 | 6OV0|1|G | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 28 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
| 29 | 6OV0|1|F | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 30 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
| 31 | 5E02|1|C | RNA (5'-R(*AP*AP*AP*A)-3') | synthetic construct | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-ray diffraction | 3.8 | 2016-07-06 | |||
| 32 | 6R9R|1|E | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
| 33 | 6R7B|1|E | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 2019-10-02 | |||
| 34 | 6O7I|1|I | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 3.2 | 2019-07-31 | |||
| 35 | 6O7H|1|K | Cyclic DNA cA4 | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 2.9 | 2019-07-31 |
Release history
| Release | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_64918.9 | NR_all_64918.8 | 3.170 | (34) 6R7B|1|D, 6OV0|1|H, 6OV0|1|G, 6OV0|1|F, 6OV0|1|E, 6O7I|1|I, 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6O6X|1|C, 6O6V|1|D, 6O6V|1|C, 5E02|1|C, 7BDV|1|H, 4BA2|1|R, 7BDV|1|F, 6YUD|1|Q, 6YUD|1|P, 6YUD|1|O, 6YUD|1|M, 6YUD|1|K, 6XL1|1|C, 6WXX|1|Y, 6WXX|1|X, 6W11|1|C, 6SCF|1|M, 6SCF|1|L, 6SCF|1|K, 6SCF|1|I, 6SCE|1|B, 6R9R|1|E, 6R9R|1|D, 6R7B|1|E | (1) 7DID|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_64918.9 | NR_all_64918.10 | 3.205 | (35) 6O7H|1|K, 6WXX|1|X, 6O7B|1|D, 6W11|1|C, 6O7B|1|C, 6SCF|1|M, 6O6X|1|D, 6SCF|1|L, 6O6X|1|C, 6SCF|1|K, 6O6V|1|D, 6SCF|1|I, 6O6V|1|C, 6SCE|1|B, 7DID|1|C, 5E02|1|C, 6R9R|1|E, 7BDV|1|H, 4BA2|1|R, 6R9R|1|D, 7BDV|1|F, 6R7B|1|E, 6YUD|1|Q, 6R7B|1|D, 6YUD|1|P, 6OV0|1|H, 6YUD|1|O, 6OV0|1|G, 6YUD|1|M, 6OV0|1|F, 6YUD|1|K, 6OV0|1|E, 6XL1|1|C, 6O7I|1|I, 6WXX|1|Y | (0) | (1) 6WXQ|1|E |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 |
| 2 | 5E02|1|C | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-RAY DIFFRACTION | 3.8 | 4 |
| 3 | 7DID|1|C | Mycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 4 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 5 | 6OV0|1|E | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 6 | 7BDV|1|F | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 2.02 | 4 |
| 7 | 6OV0|1|H | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 8 | 6SCF|1|I | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 9 | 6SCE|1|B | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-RAY DIFFRACTION | 1.83 | 4 |
| 10 | 6YUD|1|M | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
| 11 | 6YUD|1|Q | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
| 12 | 6YUD|1|O | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
| 13 | 6YUD|1|P | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
| 14 | 6YUD|1|K | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 |
| 15 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 16 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 17 | 6R9R|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 4 |
| 18 | 6R7B|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 4 |
| 19 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 20 | 6O7H|1|K | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 2.9 | 4 |
| 21 | 6O7I|1|I | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 3.2 | 4 |
| 22 | 6WXX|1|X | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 |
| 23 | 6WXX|1|Y | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 |
| 24 | 6XL1|1|C | crystal structure of cA4-activated Cad1(D294N) | X-RAY DIFFRACTION | 1.95 | 4 |
| 25 | 7BDV|1|H | Structure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 2.02 | 4 |
| 26 | 6W11|1|C | The structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4) | X-RAY DIFFRACTION | 2.46 | 4 |
| 27 | 6SCF|1|L | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 28 | 6SCF|1|K | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 29 | 6SCF|1|M | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 30 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 31 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 32 | 6R9R|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 2 |
| 33 | 6OV0|1|G | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |
| 34 | 6OV0|1|F | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |
| 35 | 6R7B|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 2 |