Equivalence class NR_all_65223.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 6 | 6VM6|1|J | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 7 | 6VM6|1|G | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 8 | 6WAN|1|K | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 9 | 6WAN|1|H | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 10 | 6WAN|1|G | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 11 | 6WAN|1|L | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 12 | 6WAN|1|I | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 13 | 6YWO|1|F | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 14 | 6WAN|1|J | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 15 | 4OAU|1|A | RNA (5'-R(P*A*AP*A)-2') | Complete human RNase L in complex with biological activators. | X-ray diffraction | 2.6 | 2014-03-12 | ||||
| 16 | 6YWO|1|E | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 17 | 6YWO|1|K | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 18 | 6VM6|1|I | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 19 | 6VM6|1|H | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 20 | 6YWO|1|I | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 21 | 2A1R|1|C | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 2005-12-20 | ||||
| 22 | 2A1R|1|D | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 2005-12-20 | ||||
| 23 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 24 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 25 | 6O79|1|C | cyclic RNA cA3 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-ray diffraction | 3 | 2019-07-31 | |||
| 26 | 6VM6|1|K | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 27 | 6HYU|1|D | RNA (5'-R(*A*AP*A)-3') | synthetic construct | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 2019-08-28 | |||
| 28 | 1LAJ|1|R | 5'-R(*AP*AP*A)-3' | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-ray diffraction | 3.4 | 2002-11-27 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_65223.2 | NR_all_65223.1 | 3.138 | (24) 6HYU|1|D, 6VM6|1|H, 6WAN|1|K, 4OAU|1|A, 6VM6|1|G, 6WAN|1|J, 3GPQ|1|F, 6Q1H|1|H, 6WAN|1|I, 3GPQ|1|E, 6Q1H|1|D, 6WAN|1|H, 2A1R|1|D, 6P7P|1|F, 6WAN|1|G, 6P7P|1|E, 6VM6|1|K, 2A1R|1|C, 6P7P|1|D, 6VM6|1|J, 1LAJ|1|R, 6O79|1|C, 6VM6|1|I, 6WAN|1|L | (4) 6YWO|1|E, 6YWO|1|K, 6YWO|1|I, 6YWO|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_65223.2 | NR_all_65223.3 | 3.144 | (28) 2A1R|1|D, 6WAN|1|G, 2A1R|1|C, 6VM6|1|K, 1LAJ|1|R, 6VM6|1|J, 6VM6|1|I, 6VM6|1|H, 6VM6|1|G, 6Q1H|1|H, 6Q1H|1|D, 6YWO|1|K, 6P7P|1|F, 6YWO|1|I, 6P7P|1|E, 6YWO|1|F, 6P7P|1|D, 6YWO|1|E, 6O79|1|C, 6WAN|1|L, 6HYU|1|D, 6WAN|1|K, 4OAU|1|A, 6WAN|1|J, 3GPQ|1|F, 6WAN|1|I, 3GPQ|1|E, 6WAN|1|H | (0) | (1) 6YBV|1|k |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6HYU|1|D | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 3 |
| 2 | 6O79|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-RAY DIFFRACTION | 3 | 3 |
| 3 | 6WAN|1|L | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 4 | 6WAN|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 5 | 6WAN|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 6 | 6WAN|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 7 | 6WAN|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 8 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 9 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 10 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 11 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 12 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 13 | 6VM6|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 14 | 6VM6|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 15 | 6VM6|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 16 | 6VM6|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 17 | 6VM6|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 18 | 6WAN|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 19 | 6YWO|1|K | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 20 | 6YWO|1|F | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 21 | 6YWO|1|I | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 22 | 6YWO|1|E | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 23 | 2A1R|1|C | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 |
| 24 | 2A1R|1|D | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 |
| 25 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 26 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 27 | 1LAJ|1|R | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-RAY DIFFRACTION | 3.4 | 3 |
| 28 | 4OAU|1|A | Complete human RNase L in complex with biological activators. | X-RAY DIFFRACTION | 2.6 | 3 |