#IFECompound(s)RNA source organismTitleMethodResolutionDate
16Q1H|1|D (rep)RNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.452019-12-25
26Q1H|1|HRNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.452019-12-25
36P7P|1|FCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.662019-12-25
46P7P|1|ECyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.662019-12-25
56P7P|1|DCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.662019-12-25
67ZGV|1|DRNA (5'-R(P*AP*AP*A)-3')SerratiaSerratia NucC bound to cA3X-RAY DIFFRACTION1.482022-10-26
77SOQ|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.152022-08-03
87SOR|1|DRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.352022-08-03
97SOR|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.352022-08-03
106VM6|1|J2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.12020-06-17
116VM6|1|G2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.12020-06-17
126WAN|1|KCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
136WAN|1|HCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
146WAN|1|GCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
156WAN|1|LCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
166WAN|1|ICyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
176YWO|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-RAY DIFFRACTION1.92020-08-05
186WAN|1|JCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.42020-06-17
194OAU|1|ARNA (5'-R(P*A*AP*A)-2')Complete human RNase L in complex with biological activators.X-RAY DIFFRACTION2.62014-03-12
206YWO|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-RAY DIFFRACTION1.92020-08-05
216YWO|1|KRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-RAY DIFFRACTION1.92020-08-05
226VM6|1|I2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.12020-06-17
236VM6|1|H2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.12020-06-17
246YWO|1|IRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-RAY DIFFRACTION1.92020-08-05
252A1R|1|C5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-RAY DIFFRACTION2.62005-12-20
266M6V|1|FRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.082020-09-30
276M6V|1|ERNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.082020-09-30
282A1R|1|D5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-RAY DIFFRACTION2.62005-12-20
293GPQ|1|ERNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22009-07-21
303GPQ|1|FRNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22009-07-21
316O79|1|Ccyclic RNA cA3synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA3X-RAY DIFFRACTION32019-07-31
326VM6|1|K2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.12020-06-17
336M6V|1|GRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.082020-09-30
346HYU|1|DRNA (5'-R(*A*AP*A)-3')synthetic constructCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-RAY DIFFRACTION3.222019-08-28
351LAJ|1|R5'-R(*AP*AP*A)-3'The Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-RAY DIFFRACTION3.42002-11-27
367QQK|1|FRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.82022-06-15
377QQK|1|GRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.82022-06-15
387QQK|1|HRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.82022-06-15
396YBV|1|kmRNAHomo sapiensStructure of a human 48S translational initiation complex - eIF2-TCELECTRON MICROSCOPY3.82020-09-16
407QQK|1|ERNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.82022-06-15

Release history

Release3.254
Date2022-10-26

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17SOR|1|DLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
27SOR|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
37SOQ|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.153
46O79|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA3X-RAY DIFFRACTION33
56WAN|1|LStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
66WAN|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
76WAN|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
86WAN|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
96WAN|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
106P7P|1|EStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
116P7P|1|FStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
126P7P|1|DStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
136Q1H|1|HStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
146Q1H|1|DStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
157QQK|1|GTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
167QQK|1|ETIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
177QQK|1|FTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
186VM6|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
196VM6|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
206VM6|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
216VM6|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
226VM6|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
236WAN|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
247QQK|1|HTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
256M6V|1|GCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
266M6V|1|ECrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
276M6V|1|FCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
286YWO|1|KCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
296YWO|1|ECutA in complex with A3 RNAX-RAY DIFFRACTION1.93
306YWO|1|ICutA in complex with A3 RNAX-RAY DIFFRACTION1.93
316YWO|1|FCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
322A1R|1|CCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
332A1R|1|DCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
346YBV|1|kStructure of a human 48S translational initiation complex - eIF2-TCELECTRON MICROSCOPY3.83
354OAU|1|AComplete human RNase L in complex with biological activators.X-RAY DIFFRACTION2.63
361LAJ|1|RThe Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-RAY DIFFRACTION3.43
373GPQ|1|ECrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22
383GPQ|1|FCrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22
397ZGV|1|DSerratia NucC bound to cA3X-RAY DIFFRACTION1.483
406HYU|1|DCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-RAY DIFFRACTION3.223