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Equivalence class NR_all_66238.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13J92|1|7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.62015-01-21
23JAN|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
33JAJ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
44D67|1|45S ribosomal RNA5S RRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-03-04
54D5Y|1|45S ribosomal RNA5S Ribosomal RNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-03-04
64UJC|1|A45S ribosomal RNA5S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF00001mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30
74UJD|1|A45S ribosomal RNA5S Ribosomal RNAOryctolagus cuniculusEukaryaRF00001mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30
84UJE|1|A45S ribosomal RNA5S Ribosomal RNAOryctolagus cuniculusEukaryaRF00001Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16

Release history

Release2.35
Date2015-08-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_66238.4NR_all_66238.32.35(6) 4UJE|1|A4, 4UJD|1|A4, 4UJC|1|A4, 4D67|1|4, 4D5Y|1|4, 3J92|1|7(2) 3JAN|1|7, 3JAJ|1|7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_66238.4NR_20.0_66238.52.36(8) 3J92|1|7, 3JAJ|1|7, 4D5Y|1|4, 4D67|1|4, 4UJC|1|A4, 4UJE|1|A4, 3JAN|1|7, 4UJD|1|A4(0) (3) 3JAH|1|7, 3JAI|1|7, 3JAG|1|7
NR_all_66238.4NR_4.0_66238.52.36(3) 3JAJ|1|7, 3JAN|1|7, 3J92|1|7(5) 4D67|1|4, 4D5Y|1|4, 4UJE|1|A4, 4UJD|1|A4, 4UJC|1|A4(3) 3JAH|1|7, 3JAI|1|7, 3JAG|1|7
NR_all_66238.4NR_all_66238.52.36(8) 3J92|1|7, 3JAJ|1|7, 3JAN|1|7, 4D67|1|4, 4UJC|1|A4, 4UJD|1|A4, 4D5Y|1|4, 4UJE|1|A4(0) (3) 3JAG|1|7, 3JAH|1|7, 3JAI|1|7

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14D67|1|4Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY9119
24D5Y|1|4Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY9119
34UJC|1|A4mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.5119
44UJD|1|A4mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.9119
54UJE|1|A4Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.9119
63J92|1|7Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.6120
73JAJ|1|7Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120
83JAN|1|7Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120
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