RNA 3D Hub //

Equivalence class NR_all_66687.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17P7Q|1|a (rep)Small subunit ribosomal RNA16S rRNA, mRNAEnterococcus faecalisBacteriaRF00177E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volumeElectron microscopy2.42022-02-23
26W6P|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177MultiBody Refinement of 70S Ribosome from Enterococcus faecalisElectron microscopy2.92020-10-14
37P7T|1|aSmall subunit ribosomal RNA16S rRNA, mRNAEnterococcus faecalisBacteriaRF00177PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state IIIElectron microscopy2.92022-02-23
47NHK|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*GP*AP*CP*AP*A)-3')Enterococcus faecalisBacteriaRF00177LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalisElectron microscopy2.92021-05-05
57P7S|1|aSmall subunit ribosomal RNA16S rRNA, mRNAEnterococcus faecalisBacteriaRF00177PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state IIElectron microscopy32022-02-23
67P7U|1|aSmall subunit ribosomal RNA16S rRNA, mRNAEnterococcus faecalisBacteriaRF00177E. faecalis 70S ribosome with P-tRNA, state IVElectron microscopy3.12022-02-23
76O90|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05Electron microscopy3.492020-09-23
86O8Z|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04Electron microscopy3.492020-09-16
96O8W|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01Electron microscopy3.532020-09-23
106O8X|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02Electron microscopy3.682020-09-23
116O8Y|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalisBacteriaRF00177Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03Electron microscopy4.142020-09-23
126WUB|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalis OG1RFBacteriaRF0017730S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinementElectron microscopy3.22020-11-04
136WUA|1|aSmall subunit ribosomal RNA16S rRNAEnterococcus faecalis OG1RFBacteriaRF0017730S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinementElectron microscopy3.22020-11-04

Release history

Release3.2193.2203.2213.222
Date2022-02-232022-03-022022-03-092022-03-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_66687.5NR_all_66687.43.219(9) 6WUB|1|a, 6WUA|1|a, 6W6P|1|a, 6O90|1|a, 6O8Z|1|a, 6O8Y|1|a, 6O8X|1|a, 6O8W|1|a, 7NHK|1|a(4) 7P7Q|1|a, 7P7U|1|a, 7P7T|1|a, 7P7S|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_66687.5NR_all_66687.63.223(13) 7P7U|1|a, 7P7T|1|a, 7P7S|1|a, 7P7Q|1|a, 7NHK|1|a, 6WUB|1|a, 6WUA|1|a, 6W6P|1|a, 6O90|1|a, 6O8Z|1|a, 6O8Y|1|a, 6O8X|1|a, 6O8W|1|a(0) (1) 7P7R|1|a

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
7P7T|1|a		PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state IIIELECTRON MICROSCOPY2.91521
2
7NHK|1|a		LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalisELECTRON MICROSCOPY2.91517
3
7P7U|1|a		E. faecalis 70S ribosome with P-tRNA, state IVELECTRON MICROSCOPY3.11521
4
7P7Q|1|a		E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volumeELECTRON MICROSCOPY2.41519
5
7P7S|1|a		PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state IIELECTRON MICROSCOPY31521
6
6O8Z|1|a		Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04ELECTRON MICROSCOPY3.491523
7
6WUA|1|a		30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinementELECTRON MICROSCOPY3.2402
8
6W6P|1|a		MultiBody Refinement of 70S Ribosome from Enterococcus faecalisELECTRON MICROSCOPY2.91523
9
6WUB|1|a		30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinementELECTRON MICROSCOPY3.21121
10
6O8X|1|a		Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02ELECTRON MICROSCOPY3.681528
11
6O8Y|1|a		Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03ELECTRON MICROSCOPY4.141528
12
6O8W|1|a		Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01ELECTRON MICROSCOPY3.531523
13
6O90|1|a		Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05ELECTRON MICROSCOPY3.491528

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0400 s