Equivalence class NR_all_67328.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6AHD|1|I+ 6AHD|1|H+ 6AHD|1|F (rep) | U4 spliceosomal RNA + U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U4snRNA, U2snRNA, U6snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00015 + RF00004 + RF00026 | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | Electron microscopy | 3.8 | 2018-11-14 |
| 2 | 5O9Z|1|4+ 5O9Z|1|2+ 5O9Z|1|6 | U4 spliceosomal RNA + U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens U4A snRNA, Human gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA | Homo sapiens | Eukarya | RF00015 + RF00004 + RF00026 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | Electron microscopy | 4.5 | 2017-08-16 |
| 3 | 6AH0|1|I+ 6AH0|1|H+ 6AH0|1|F | U4 spliceosomal RNA + U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U4snRNA, U2snRNA, U6snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00015 + RF00004 + RF00026 | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | Electron microscopy | 5.7 | 2018-11-14 |
| 4 | 3JCR|1|M | U4 spliceosomal RNA | U4 snRNA | Homo sapiens | Eukarya | RF00015 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | Electron microscopy | 7 | 2016-03-09 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_67328.1 | NR_all_58139.1 | 3.48 | (2) 5O9Z|1|4+5O9Z|1|2+5O9Z|1|6, 3JCR|1|M | (2) 6AHD|1|I+6AHD|1|H+6AHD|1|F, 6AH0|1|I+6AH0|1|H+6AH0|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_67328.1 | NR_all_67328.2 | 3.70 | (4) 6AHD|1|I+6AHD|1|H+6AHD|1|F, 6AH0|1|I+6AH0|1|H+6AH0|1|F, 5O9Z|1|4+5O9Z|1|2+5O9Z|1|6, 3JCR|1|M | (0) | (2) 6QX9|1|4, 6QW6|1|4 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6AH0|1|I+6AH0|1|H+6AH0|1|F | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 117 |
| 2 | 6AHD|1|I+6AHD|1|H+6AHD|1|F | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 136 |
| 3 | 5O9Z|1|4+5O9Z|1|2+5O9Z|1|6 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 137 |
| 4 | 3JCR|1|M | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 103 |