RNA 3D Hub //

Equivalence class NR_all_68467.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15LZS|1|2 (rep)Transfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
25LZS|1|iiTransfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
35LZV|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
45LZZ|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
55LZW|1|2Transfer RNAP-site tRNA, mRNA (truncated)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
65LZX|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
75LZT|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
86FRK|1|2Transfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
93JAH|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
103JAG|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
113JAI|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
126FTI|1|qTransfer RNAp-Site tRNAOryctolagus cuniculusEukaryaRF00005Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeElectron microscopy4.22018-03-21
135LZU|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
143JAJ|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
153JAN|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release3.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.43
Date2018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_68467.3NR_all_68467.23.15(14) 6FTI|1|q, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|ii, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 3JAG|1|2(1) 6FRK|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_68467.3NR_all_68467.43.44(15) 5LZS|1|2, 6FRK|1|2, 3JAN|1|3, 5LZZ|1|2, 3JAJ|1|3, 5LZX|1|2, 3JAI|1|2, 5LZW|1|2, 3JAH|1|2, 5LZV|1|2, 3JAG|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|ii, 6FTI|1|q(0) (2) 6HCF|1|23, 6HCM|1|23

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JAJ|1|3Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
23JAN|1|3Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
36FRK|1|2Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.776
43JAI|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.6576
53JAG|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.6576
66FTI|1|qCryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeELECTRON MICROSCOPY4.276
73JAH|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.4576
85LZV|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.3576
95LZT|1|2Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.6576
105LZW|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.5376
115LZX|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.6776
125LZZ|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.4776
135LZS|1|2Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
145LZU|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.7576
155LZS|1|iiStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
Copyright 2024 BGSU RNA group. Page generated in 0.0037 s