Equivalence class NR_all_68467.4 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 5LZS|1|2 (rep) | tRNA, mRNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 2016-11-30 |
2 | 5LZS|1|ii | tRNA, mRNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 2016-11-30 |
3 | 5LZV|1|2 | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 2016-11-30 |
4 | 5LZZ|1|2 | P-site tRNA, mRNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 2016-11-30 |
5 | 5LZW|1|2 | P-site tRNA, mRNA (truncated) | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 2016-11-30 |
6 | 5LZX|1|2 | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 2016-11-30 |
7 | 5LZT|1|2 | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 2016-11-30 |
8 | 6FRK|1|2 | tRNA | Oryctolagus cuniculus | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 2018-03-28 |
9 | 3JAH|1|2 | tRNA(Val), mRNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 2015-08-12 |
10 | 6HCF|1|23 | P-site tRNA, mRNA | Oryctolagus cuniculus | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 2018-10-17 |
11 | 3JAG|1|2 | tRNA(Val), mRNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
12 | 3JAI|1|2 | tRNA(Val), mRNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
13 | 6FTI|1|q | p-Site tRNA | Oryctolagus cuniculus | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 2018-03-21 |
14 | 5LZU|1|2 | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 2016-11-30 |
15 | 6HCM|1|23 | P-site tRNA, mRNA | Oryctolagus cuniculus | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 2018-10-17 |
16 | 3JAJ|1|3 | Val tRNA | Oryctolagus cuniculus | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
17 | 3JAN|1|3 | Val tRNA | Oryctolagus cuniculus | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_68467.4 | NR_all_68467.5 | 3.49 | (17) 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|ii, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 6HCM|1|23, 3JAG|1|2, 6HCF|1|23, 6FTI|1|q, 6FRK|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2 | (0) | (1) 6MTB|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 3JAJ|1|3 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
2 | 3JAN|1|3 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
3 | 6FRK|1|2 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 76 |
4 | 6HCF|1|23 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 76 |
5 | 6HCM|1|23 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 76 |
6 | 3JAI|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
7 | 3JAG|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
8 | 6FTI|1|q | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 76 |
9 | 3JAH|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 76 |
10 | 5LZV|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 76 |
11 | 5LZT|1|2 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 76 |
12 | 5LZW|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 76 |
13 | 5LZX|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 76 |
14 | 5LZZ|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 76 |
15 | 5LZS|1|2 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 76 |
16 | 5LZU|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 76 |
17 | 5LZS|1|ii | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 76 |