Equivalence class NR_all_69813.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2K4C|1|A (rep) | Transfer RNA | 76-MER | Escherichia coli | Bacteria | RF00005 | tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data | SOLUTION NMR, SOLUTION SCATTERING | 2008-12-09 | |
| 2 | 4V70|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | ELECTRON MICROSCOPY | 17 | 2014-07-09 |
| 3 | 4V7A|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4) | ELECTRON MICROSCOPY | 9 | 2014-07-09 |
| 4 | 4V79|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | ELECTRON MICROSCOPY | 15 | 2014-07-09 |
| 5 | 4V73|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | ELECTRON MICROSCOPY | 15 | 2014-07-09 |
| 6 | 4V76|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | ELECTRON MICROSCOPY | 17 | 2014-07-09 |
| 7 | 4V78|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | ELECTRON MICROSCOPY | 20 | 2014-07-09 |
| 8 | 4V77|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | ELECTRON MICROSCOPY | 17 | 2014-07-09 |
| 9 | 4V6Y|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | ELECTRON MICROSCOPY | 12 | 2014-07-09 |
| 10 | 4V71|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | ELECTRON MICROSCOPY | 20 | 2014-07-09 |
| 11 | 4V72|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | ELECTRON MICROSCOPY | 13 | 2014-07-09 |
| 12 | 4V75|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | ELECTRON MICROSCOPY | 12 | 2014-07-09 |
| 13 | 4V74|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | ELECTRON MICROSCOPY | 17 | 2014-07-09 |
| 14 | 4V6Z|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | ELECTRON MICROSCOPY | 12 | 2014-07-09 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_69813.1 | NR_20.0_69813.2 | 2.77 | (13) 4V79|1|A1, 4V7A|1|A1, 4V6Y|1|A1, 4V6Z|1|A1, 4V71|1|A1, 4V72|1|A1, 4V73|1|A1, 4V75|1|A1, 4V76|1|A1, 4V77|1|A1, 4V78|1|A1, 4V70|1|A1, 4V74|1|A1 | (1) 2K4C|1|A | (3) 5IBB|1|1K, 5IBB|1|3K, 5IBB|1|3L |
| NR_all_69813.1 | NR_all_69813.2 | 2.77 | (14) 2K4C|1|A, 4V6Z|1|A1, 4V70|1|A1, 4V71|1|A1, 4V73|1|A1, 4V74|1|A1, 4V75|1|A1, 4V77|1|A1, 4V78|1|A1, 4V79|1|A1, 4V6Y|1|A1, 4V72|1|A1, 4V76|1|A1, 4V7A|1|A1 | (0) | (3) 5IBB|1|3L, 5IBB|1|1K, 5IBB|1|3K |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V77|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | ELECTRON MICROSCOPY | 17 | 70 |
| 2 | 4V71|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | ELECTRON MICROSCOPY | 20 | 70 |
| 3 | 4V70|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | ELECTRON MICROSCOPY | 17 | 70 |
| 4 | 4V74|1|A1 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | ELECTRON MICROSCOPY | 17 | 70 |
| 5 | 4V79|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | ELECTRON MICROSCOPY | 15 | 70 |
| 6 | 4V73|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | ELECTRON MICROSCOPY | 15 | 70 |
| 7 | 4V6Z|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | ELECTRON MICROSCOPY | 12 | 70 |
| 8 | 4V6Y|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | ELECTRON MICROSCOPY | 12 | 70 |
| 9 | 4V72|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | ELECTRON MICROSCOPY | 13 | 70 |
| 10 | 4V78|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | ELECTRON MICROSCOPY | 20 | 70 |
| 11 | 4V7A|1|A1 | E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4) | ELECTRON MICROSCOPY | 9 | 70 |
| 12 | 4V75|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | ELECTRON MICROSCOPY | 12 | 70 |
| 13 | 4V76|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | ELECTRON MICROSCOPY | 17 | 70 |
| 14 | 2K4C|1|A | tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data | SOLUTION NMR, SOLUTION SCATTERING | 76 |