Equivalence class NR_all_69813.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5IBB|1|1K (rep) | Transfer RNA | tRNAVal, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 2 | 5IBB|1|3L | Transfer RNA | tRNAVal | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 3 | 5IBB|1|3K | Transfer RNA | tRNAVal | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 4 | 4V7A|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4) | Electron microscopy | 9 | 2014-07-09 |
| 5 | 4V6Y|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | Electron microscopy | 12 | 2014-07-09 |
| 6 | 4V75|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | Electron microscopy | 12 | 2014-07-09 |
| 7 | 4V6Z|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | Electron microscopy | 12 | 2014-07-09 |
| 8 | 4V72|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | Electron microscopy | 13 | 2014-07-09 |
| 9 | 4V79|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | Electron microscopy | 15 | 2014-07-09 |
| 10 | 4V73|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | Electron microscopy | 15 | 2014-07-09 |
| 11 | 4V70|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | Electron microscopy | 17 | 2014-07-09 |
| 12 | 4V76|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | Electron microscopy | 17 | 2014-07-09 |
| 13 | 4V77|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | Electron microscopy | 17 | 2014-07-09 |
| 14 | 4V74|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | Electron microscopy | 17 | 2014-07-09 |
| 15 | 4V78|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | Electron microscopy | 20 | 2014-07-09 |
| 16 | 4V71|1|A1 | Transfer RNA | fMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3' | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | Electron microscopy | 20 | 2014-07-09 |
| 17 | 2K4C|1|A | Transfer RNA | 76-MER | Escherichia coli | Bacteria | RF00005 | tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data | Solution NMR, solution scattering | 2008-12-09 |
Release history
| Release | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_69813.2 | NR_all_69813.1 | 2.77 | (14) 4V77|1|A1, 4V76|1|A1, 4V75|1|A1, 4V74|1|A1, 4V73|1|A1, 4V72|1|A1, 4V71|1|A1, 4V70|1|A1, 4V7A|1|A1, 4V6Z|1|A1, 4V79|1|A1, 4V6Y|1|A1, 4V78|1|A1, 2K4C|1|A | (3) 5IBB|1|1K, 5IBB|1|3L, 5IBB|1|3K | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_69813.2 | NR_all_69813.3 | 3.18 | (17) 4V6Z|1|A1, 4V73|1|A1, 4V77|1|A1, 5IBB|1|1K, 4V6Y|1|A1, 4V72|1|A1, 4V76|1|A1, 4V7A|1|A1, 5IBB|1|3L, 2K4C|1|A, 4V71|1|A1, 4V75|1|A1, 4V79|1|A1, 5IBB|1|3K, 4V70|1|A1, 4V74|1|A1, 4V78|1|A1 | (0) | (4) 6CAE|1|2w, 6CAE|1|1y, 6CAE|1|1w, 6CAE|1|2y |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V75|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | ELECTRON MICROSCOPY | 12 | 70 |
| 2 | 4V77|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | ELECTRON MICROSCOPY | 17 | 70 |
| 3 | 4V7A|1|A1 | E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4) | ELECTRON MICROSCOPY | 9 | 70 |
| 4 | 4V78|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | ELECTRON MICROSCOPY | 20 | 70 |
| 5 | 5IBB|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 70 |
| 6 | 5IBB|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 |
| 7 | 4V71|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | ELECTRON MICROSCOPY | 20 | 70 |
| 8 | 4V6Z|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | ELECTRON MICROSCOPY | 12 | 70 |
| 9 | 4V70|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | ELECTRON MICROSCOPY | 17 | 70 |
| 10 | 4V76|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | ELECTRON MICROSCOPY | 17 | 70 |
| 11 | 5IBB|1|1K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 67 |
| 12 | 4V79|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | ELECTRON MICROSCOPY | 15 | 70 |
| 13 | 4V72|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | ELECTRON MICROSCOPY | 13 | 70 |
| 14 | 4V6Y|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | ELECTRON MICROSCOPY | 12 | 70 |
| 15 | 4V73|1|A1 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | ELECTRON MICROSCOPY | 15 | 70 |
| 16 | 4V74|1|A1 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | ELECTRON MICROSCOPY | 17 | 70 |
| 17 | 2K4C|1|A | tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data | SOLUTION NMR, SOLUTION SCATTERING | 76 |