NR_all_69813.4

Members (25)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5IBB\|1\|1K (rep)	Transfer RNA	tRNAVal, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
2	6CAE\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2018-04-18
3	6ND6\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	2019-02-20
4	5IBB\|1\|3L	Transfer RNA	tRNAVal	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
5	6CAE\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2018-04-18
6	6CAE\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2018-04-18
7	6ND6\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	2019-02-20
8	6CAE\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2018-04-18
9	5IBB\|1\|3K	Transfer RNA	tRNAVal	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
10	6ND6\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	2019-02-20
11	6ND6\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	2019-02-20
12	4V7A\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	Electron microscopy	9	2014-07-09
13	4V6Y\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	Electron microscopy	12	2014-07-09
14	4V75\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	Electron microscopy	12	2014-07-09
15	4V6Z\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	Electron microscopy	12	2014-07-09
16	4V72\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	Electron microscopy	13	2014-07-09
17	4V73\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	Electron microscopy	15	2014-07-09
18	4V79\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	Electron microscopy	15	2014-07-09
19	4V70\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	Electron microscopy	17	2014-07-09
20	4V76\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	Electron microscopy	17	2014-07-09
21	4V77\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	Electron microscopy	17	2014-07-09
22	4V74\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	Electron microscopy	17	2014-07-09
23	4V78\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	Electron microscopy	20	2014-07-09
24	4V71\|1\|A1	Transfer RNA	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	Electron microscopy	20	2014-07-09
25	2K4C\|1\|A	Transfer RNA	76-MER	Escherichia coli	Bacteria	RF00005	tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data	Solution NMR, solution scattering		2008-12-09

Release history

Release	3.62
Date	2019-02-22

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_69813.4	NR_all_69813.3	3.62	(21) 4V75\|1\|A1, 5IBB\|1\|3L, 2K4C\|1\|A, 4V74\|1\|A1, 5IBB\|1\|3K, 4V73\|1\|A1, 5IBB\|1\|1K, 4V7A\|1\|A1, 4V72\|1\|A1, 4V79\|1\|A1, 6CAE\|1\|2y, 4V71\|1\|A1, 4V78\|1\|A1, 6CAE\|1\|2w, 4V70\|1\|A1, 4V77\|1\|A1, 6CAE\|1\|1y, 4V6Z\|1\|A1, 4V76\|1\|A1, 6CAE\|1\|1w, 4V6Y\|1\|A1	(4) 6ND6\|1\|2w, 6ND6\|1\|1y, 6ND6\|1\|1w, 6ND6\|1\|2y	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_69813.4	NR_all_69813.5	3.63	(25) 6CAE\|1\|1y, 4V6Z\|1\|A1, 6ND6\|1\|1y, 4V73\|1\|A1, 4V76\|1\|A1, 4V79\|1\|A1, 5IBB\|1\|3K, 6ND6\|1\|1w, 4V72\|1\|A1, 6ND6\|1\|2y, 4V75\|1\|A1, 4V78\|1\|A1, 5IBB\|1\|1K, 6CAE\|1\|1w, 4V6Y\|1\|A1, 6CAE\|1\|2y, 4V71\|1\|A1, 6ND6\|1\|2w, 4V74\|1\|A1, 4V77\|1\|A1, 4V7A\|1\|A1, 2K4C\|1\|A, 5IBB\|1\|3L, 6CAE\|1\|2w, 4V70\|1\|A1	(0)	(5) 6BY1\|1\|BW, 6BY1\|1\|AV, 6BY1\|1\|AW, 6BY1\|1\|AY, 6BY1\|1\|BV

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	2K4C\|1\|A	tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data	SOLUTION NMR, SOLUTION SCATTERING		76
2	4V74\|1\|A1	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	ELECTRON MICROSCOPY	17	70
3	6ND6\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
4	6CAE\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
5	6ND6\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	68
6	6CAE\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	68
7	5IBB\|1\|3K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	70
8	5IBB\|1\|3L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	71
9	4V72\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	ELECTRON MICROSCOPY	13	70
10	4V70\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	ELECTRON MICROSCOPY	17	70
11	5IBB\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	67
12	4V6Y\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	ELECTRON MICROSCOPY	12	70
13	6ND6\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
14	6CAE\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
15	6CAE\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
16	6ND6\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
17	4V71\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	ELECTRON MICROSCOPY	20	70
18	4V6Z\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	ELECTRON MICROSCOPY	12	70
19	4V7A\|1\|A1	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	ELECTRON MICROSCOPY	9	70
20	4V79\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	ELECTRON MICROSCOPY	15	70
21	4V77\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	ELECTRON MICROSCOPY	17	70
22	4V78\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	ELECTRON MICROSCOPY	20	70
23	4V75\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	ELECTRON MICROSCOPY	12	70
24	4V76\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	ELECTRON MICROSCOPY	17	70
25	4V73\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	ELECTRON MICROSCOPY	15	70

Equivalence class NR_all_69813.4 Obsolete

Release history

Parents

Children