RNA 3D Hub //

Equivalence class NR_all_69813.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15IBB|1|1K (rep)Transfer RNAmRNA, tRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96722016-05-25
26CAE|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6742018-04-18
36BY1|1|AWTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
46ND6|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85742019-02-20
56BY1|1|BWTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
65IBB|1|3LTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96712016-05-25
76CAE|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
86BY1|1|BVTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
96BY1|1|AVTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
106CAE|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
116ND6|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
126CAE|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
135IBB|1|3KTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96702016-05-25
146ND6|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
156ND6|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
166N1D|1|BPTNTransfer RNAP-tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.2762019-04-03
176N1D|1|APTNTransfer RNAmRNA, P-tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.2762019-04-03
186BY1|1|AYTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
194V7A|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)Electron microscopy9762014-07-09
204V6Y|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)Electron microscopy12762014-07-09
214V75|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)Electron microscopy12762014-07-09
224V6Z|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)Electron microscopy12762014-07-09
234V72|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)Electron microscopy13762014-07-09
244V73|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)Electron microscopy15762014-07-09
254V79|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)Electron microscopy15762014-07-09
264V70|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)Electron microscopy17762014-07-09
274V76|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)Electron microscopy17762014-07-09
284V77|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)Electron microscopy17762014-07-09
294V74|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF0000570S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)Electron microscopy17762014-07-09
304V78|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)Electron microscopy20762014-07-09
314V71|1|A1Transfer RNA5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', fMet-Val-tRNA-ValEscherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)Electron microscopy20762014-07-09
322K4C|1|ATransfer RNA76-MEREscherichia coliBacteriaRF00005tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS dataSolution NMR, solution scattering762008-12-09

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14V76|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY1776
24V7A|1|A1E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY976
34V78|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY2076
44V6Z|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY1276
56ND6|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8574
66CAE|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.674
76CAE|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
86ND6|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
95IBB|1|3KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9670
105IBB|1|3LStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9671
114V72|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY1376
126N1D|1|BPTNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.276
136N1D|1|APTNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.276
146BY1|1|AYE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
154V71|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY2076
164V79|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY1576
174V77|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY1776
184V75|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY1276
196BY1|1|AWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
206BY1|1|BWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
216BY1|1|BVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
226BY1|1|AVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
234V73|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY1576
245IBB|1|1KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9672
254V70|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY1776
264V6Y|1|A1E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY1276
276ND6|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
286CAE|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
296CAE|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
306ND6|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
314V74|1|A170S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY1776
322K4C|1|AtRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS dataSOLUTION NMR, SOLUTION SCATTERING76

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.515 s