Equivalence class NR_all_73286.14 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 6QW6|1|5 (rep) | U5 snRNA | Homo sapiens | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 2019-04-17 |
2 | 6QX9|1|5 | U5 snRNA | Homo sapiens | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 2019-04-17 |
3 | 6QDV|1|5 | U5 snRNA, Ligated exons: MINX mRNA | Homo sapiens | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 2019-02-20 |
4 | 6ZYM|1|5 | U5 snRNA, pre-mRNA | Homo sapiens | Human C Complex Spliceosome - High-resolution CORE | ELECTRON MICROSCOPY | 3.4 | 2020-10-14 |
5 | 6ICZ|1|B | U5snRNA, pre-mRNA | Homo sapiens | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 2019-03-13 |
6 | 6FF4|1|5 | U5 snRNA, U2 snRNA, pre mRNA | Homo sapiens | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 2018-08-29 |
7 | 6ID0|1|B | U5snRNA | Homo sapiens | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 2019-03-13 |
8 | 5XJC|1|B | U5 snRNA, pre-mRNA | Homo sapiens | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 2017-07-05 |
9 | 6ID1|1|B | U5snRNA | Homo sapiens | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 2019-03-13 |
10 | 7AAV|1|5 | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Human pre-Bact-2 spliceosome core structure | ELECTRON MICROSCOPY | 4.2 | 2020-12-09 |
11 | 5YZG|1|B | U5 snRNA, Pre-mRNA | Homo sapiens | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 2018-08-08 |
12 | 6AHD|1|B | U5snRNA, pre-mRNA | Homo sapiens | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 2018-11-14 |
13 | 5O9Z|1|5 | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA | Homo sapiens | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 2017-08-16 |
14 | 6FF7|1|5 | U5 snRNA, U2 snRNA, pre-mRNA | Homo sapiens | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 4.5 | 2019-03-13 |
15 | 7ABF|1|5 | U5 small nuclear RNA, MINX M3 RNA | Homo sapiens | Human pre-Bact-1 spliceosome core structure | ELECTRON MICROSCOPY | 3.9 | 2020-12-09 |
16 | 5Z58|1|B | U5 snRNA, pre-mRNA | Homo sapiens | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 2018-09-19 |
17 | 7A5P|1|5 | U5 snRNA | Homo sapiens | Human C Complex Spliceosome - Medium-resolution PERIPHERY | ELECTRON MICROSCOPY | 5 | 2020-10-14 |
18 | 5Z56|1|B | U5 snRNA, pre-mRNA | Homo sapiens | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 2018-09-19 |
19 | 6AH0|1|B | U5snRNA | Homo sapiens | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 2018-11-14 |
20 | 5MQF|1|5 | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 2017-03-22 |
21 | 5Z57|1|B | U5 snRNA, pre-mRNA | Homo sapiens | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 2018-09-19 |
22 | 3JCR|1|H | U5 snRNA | Homo sapiens | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 2016-03-09 |
23 | 7ABG|1|5 | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Human pre-Bact-1 spliceosome | ELECTRON MICROSCOPY | 7.8 | 2020-12-23 |
24 | 7ABI|1|5 | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Human pre-Bact-2 spliceosome | ELECTRON MICROSCOPY | 8 | 2021-02-10 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_73286.14 | NR_all_73286.13 | 3.165 | (23) 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF7|1|5, 6FF4|1|5, 6AHD|1|B, 6AH0|1|B, 5Z58|1|B, 5Z57|1|B, 5Z56|1|B, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 3JCR|1|H, 7ABG|1|5, 7ABF|1|5, 7AAV|1|5, 7A5P|1|5, 6ZYM|1|5, 6QX9|1|5, 6QW6|1|5, 6QDV|1|5 | (1) 7ABI|1|5 | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_73286.14 | NR_all_73286.15 | 3.172 | (24) 5XJC|1|B, 7A5P|1|5, 5O9Z|1|5, 6ZYM|1|5, 5MQF|1|5, 6QX9|1|5, 3JCR|1|H, 6QW6|1|5, 6QDV|1|5, 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF7|1|5, 6FF4|1|5, 6AHD|1|B, 6AH0|1|B, 5Z58|1|B, 7ABI|1|5, 5Z57|1|B, 7ABG|1|5, 5Z56|1|B, 7ABF|1|5, 5YZG|1|B, 7AAV|1|5 | (0) | (1) 7DVQ|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6ICZ|1|B | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 97 |
2 | 6ID1|1|B | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 98 |
3 | 6ID0|1|B | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 98 |
4 | 6QDV|1|5 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 75 |
5 | 6QW6|1|5 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 104 |
6 | 6QX9|1|5 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 104 |
7 | 6AHD|1|B | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 115 |
8 | 6AH0|1|B | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 115 |
9 | 5O9Z|1|5 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 114 |
10 | 5MQF|1|5 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 114 |
11 | 7A5P|1|5 | Human C Complex Spliceosome - Medium-resolution PERIPHERY | ELECTRON MICROSCOPY | 5 | 40 |
12 | 7ABI|1|5 | Human pre-Bact-2 spliceosome | ELECTRON MICROSCOPY | 8 | 114 |
13 | 7ABG|1|5 | Human pre-Bact-1 spliceosome | ELECTRON MICROSCOPY | 7.8 | 114 |
14 | 7ABF|1|5 | Human pre-Bact-1 spliceosome core structure | ELECTRON MICROSCOPY | 3.9 | 58 |
15 | 7AAV|1|5 | Human pre-Bact-2 spliceosome core structure | ELECTRON MICROSCOPY | 4.2 | 69 |
16 | 6FF7|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 4.5 | 70 |
17 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 |
18 | 6ZYM|1|5 | Human C Complex Spliceosome - High-resolution CORE | ELECTRON MICROSCOPY | 3.4 | 74 |
19 | 5Z58|1|B | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 84 |
20 | 5Z56|1|B | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 84 |
21 | 5Z57|1|B | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 84 |
22 | 5YZG|1|B | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 84 |
23 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 |
24 | 3JCR|1|H | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 63 |