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Equivalence class NR_all_73286.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15XJC|1|B (rep)U5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromElectron microscopy3.62017-07-05
25YZG|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionElectron microscopy4.12018-08-08
35O9Z|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)Electron microscopy4.52017-08-16
45Z58|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.Electron microscopy4.92018-09-19
55Z56|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.Electron microscopy5.12018-09-19
65MQF|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron)Homo sapiensEukaryaRF00020Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)Electron microscopy5.92017-03-22
75Z57|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromElectron microscopy6.52018-09-19
83JCR|1|HU5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF000203D structure determination of the human*U4/U6.U5* tri-snRNP complexElectron microscopy72016-03-09
96FF4|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy3.42018-08-29

Release history

Release3.403.413.423.433.443.453.463.47
Date2018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_73286.6NR_all_73286.53.40(6) 6FF4|1|5, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 3JCR|1|H(3) 5Z57|1|B, 5Z56|1|B, 5Z58|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_73286.6NR_all_73286.73.48(9) 5Z58|1|B, 5Z57|1|B, 5Z56|1|B, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 3JCR|1|H, 6FF4|1|5(0) (2) 6AHD|1|B, 6AH0|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15O9Z|1|5Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)ELECTRON MICROSCOPY4.5114
25MQF|1|5Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)ELECTRON MICROSCOPY5.9114
36FF4|1|5human Bact spliceosome core structureELECTRON MICROSCOPY3.470
45Z58|1|BCryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.ELECTRON MICROSCOPY4.984
55Z57|1|BCryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromELECTRON MICROSCOPY6.584
65Z56|1|Bcryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.ELECTRON MICROSCOPY5.184
75YZG|1|BThe Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionELECTRON MICROSCOPY4.184
85XJC|1|BCryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromELECTRON MICROSCOPY3.684
93JCR|1|H3D structure determination of the human*U4/U6.U5* tri-snRNP complexELECTRON MICROSCOPY763
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