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Equivalence class NR_all_73426.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17EVO|1|H (rep)U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004The cryo-EM structure of the human 17S U2 snRNPElectron microscopy2.52022-08-03
28HK1|1|HU2 snRNAHomo sapiensEukaryaThe cryo-EM structure of human pre-17S U2 snRNPElectron microscopy2.72023-03-08
37Q4O|1|2+ 7Q4O|1|hU2 splicesomal small nuclear RNAU2 snRNA, BPS oligoHomo sapiensEukarya + SyntheticRF00004Substrate-bound A-like U2 snRNPElectron microscopy2.22022-03-30
47Q4P|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004U2 snRNP after ATP-dependent remodelling snRNPElectron microscopy2.22022-03-30
57Q3L|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004Human 17S U2 snRNP 5' domainElectron microscopy2.32022-03-30
66QX9|1|2U2 splicesomal small nuclear RNAU2 snRNA, U6 snRNA, AdML pre-mRNAHomo sapiensEukaryaRF00004Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).Electron microscopy3.282019-04-17
76Y50|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF000045'domain of human 17S U2 snRNPElectron microscopy4.12020-07-01
87ABH|1|2U2 splicesomal small nuclear RNAU2 snRNA, MINX M3 pre-mRNAHomo sapiensEukaryaRF00004Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion)Electron microscopy4.52020-12-09
95Z58|1|H+ 5Z58|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.Electron microscopy4.92018-09-19
105MQF|1|2+ 5MQF|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAHuman gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA (intron)Homo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)Electron microscopy5.92017-03-22
115Z56|1|H+ 5Z56|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.Electron microscopy5.12018-09-19
126Y5Q|1|2U2 splicesomal small nuclear RNAU2snRNAHomo sapiensEukaryaRF00004human 17S U2 snRNPElectron microscopy7.12020-06-17
136Y53|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004human 17S U2 snRNP low resolution partElectron microscopy7.12020-06-17
145Z57|1|H+ 5Z57|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromElectron microscopy6.52018-09-19
157ABI|1|2+ 7ABI|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, MINX M3 pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Human pre-Bact-2 spliceosomeElectron microscopy82021-02-10

Release history

Release3.2733.2743.2753.2763.2773.2783.2793.280
Date2023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_73426.4NR_all_73426.33.273(14) 6Y53|1|2, 6Y50|1|2, 6QX9|1|2, 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 5MQF|1|2+5MQF|1|6, 7Q4P|1|2, 7Q4O|1|2+7Q4O|1|h, 7Q3L|1|2, 7EVO|1|H, 7ABI|1|2+7ABI|1|6, 7ABH|1|2, 6Y5Q|1|2(1) 8HK1|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_73426.4NR_all_73426.53.281(15) 6Y53|1|2, 8HK1|1|H, 6Y50|1|2, 7Q4P|1|2, 6QX9|1|2, 7Q4O|1|2+7Q4O|1|h, 5Z58|1|H+5Z58|1|F, 7Q3L|1|2, 5Z57|1|H+5Z57|1|F, 7EVO|1|H, 5Z56|1|H+5Z56|1|F, 7ABI|1|2+7ABI|1|6, 5MQF|1|2+5MQF|1|6, 7ABH|1|2, 6Y5Q|1|2(0) (2) 7VPX|1|H, 7ONB|1|H

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15MQF|1|2+5MQF|1|6Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)ELECTRON MICROSCOPY5.9140
26Y53|1|2human 17S U2 snRNP low resolution partELECTRON MICROSCOPY7.198
37EVO|1|HThe cryo-EM structure of the human 17S U2 snRNPELECTRON MICROSCOPY2.5148
48HK1|1|HThe cryo-EM structure of human pre-17S U2 snRNPELECTRON MICROSCOPY2.7148
56Y5Q|1|2human 17S U2 snRNPELECTRON MICROSCOPY7.1148
66Y50|1|25'domain of human 17S U2 snRNPELECTRON MICROSCOPY4.150
77Q3L|1|2Human 17S U2 snRNP 5' domainELECTRON MICROSCOPY2.341
86QX9|1|2Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).ELECTRON MICROSCOPY3.2894
97ABH|1|2Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion)ELECTRON MICROSCOPY4.537
107ABI|1|2+7ABI|1|6Human pre-Bact-2 spliceosomeELECTRON MICROSCOPY8164
115Z57|1|H+5Z57|1|FCryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromELECTRON MICROSCOPY6.5136
125Z56|1|H+5Z56|1|Fcryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.ELECTRON MICROSCOPY5.1136
135Z58|1|H+5Z58|1|FCryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.ELECTRON MICROSCOPY4.9136
147Q4O|1|2+7Q4O|1|hSubstrate-bound A-like U2 snRNPELECTRON MICROSCOPY2.224
157Q4P|1|2U2 snRNP after ATP-dependent remodelling snRNPELECTRON MICROSCOPY2.231
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