Equivalence class NR_all_73428.11 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6ZM6|1|B (rep) | mitochondrial tRNAVal | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 2021-01-13 | |
| 2 | 6ZM5|1|B | mitochondrial tRNAVal | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 2021-01-13 | |
| 3 | 7ODR|1|B | mitochondrial tRNAVal | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 2021-06-23 | |
| 4 | 7OF0|1|B | mitochondrial tRNAVal | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 2021-06-09 | |
| 5 | 7ODT|1|B | mitochondrial tRNAVal | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 2021-06-23 | |
| 6 | 7ODS|1|B | mitochondrial tRNAVal | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 2021-06-23 | |
| 7 | 7OF7|1|B | mitochondrial tRNAVal | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 2021-06-23 | |
| 8 | 7OF6|1|B | Mitochondrial tRNAVal | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 2021-06-09 | |
| 9 | 7OF4|1|B | mitochondrial tRNAVal | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 2021-06-09 | |
| 10 | 7OF3|1|B | Mitochondrial tRNAVal | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 2021-05-19 | |
| 11 | 7OF2|1|B | mitochondrial tRNAVal | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 2021-06-02 | |
| 12 | 7OF5|1|B | Mitochondrial tRNAVal | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 2021-06-09 | |
| 13 | 6VMI|1|B | tRNAval | Homo sapiens | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 2020-08-05 |
| 14 | 6VLZ|1|B | tRNAval | Homo sapiens | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 2020-08-05 |
| 15 | 7A5J|1|B | mt-tRNAVal | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 2020-12-23 | |
| 16 | 5OOL|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 2017-09-13 |
| 17 | 5OOM|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 2017-09-13 |
| 18 | 7L20|1|B | tRNAval | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 2021-05-12 | |
| 19 | 7A5H|1|B | mt-tRNAVal | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 2020-12-23 | |
| 20 | 6ZSC|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 2020-09-16 |
| 21 | 7L08|1|B | tRNAVAL | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 2021-05-12 | |
| 22 | 6ZSD|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 2020-09-16 |
| 23 | 6I9R|1|B | tRNA Val | Homo sapiens | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | ELECTRON MICROSCOPY | 3.9 | 2020-07-08 |
| 24 | 7A5I|1|B3 | mt-tRNAVal | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 2020-12-23 | |
| 25 | 7A5K|1|B3 | mt-tRNAVal | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 2020-12-23 | |
| 26 | 7OG4|1|XB | mitochondrial tRNAVal | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 2021-06-23 | |
| 27 | 3J7Y|1|B | mt-tRNAVal | Homo sapiens | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 2014-10-15 |
| 28 | 6ZS9|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 2020-10-14 |
| 29 | 6ZSA|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 2020-10-21 |
| 30 | 6ZSG|1|XB | mt-tRNA Val | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 2020-10-14 |
| 31 | 3J9M|1|B | mt-tRNAVal | Homo sapiens | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 2015-04-15 |
| 32 | 7A5G|1|B3 | mt-tRNAVal | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 2020-12-23 | |
| 33 | 7A5F|1|B3 | mt-tRNA Val | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 2020-12-23 | |
| 34 | 6ZSB|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 2020-09-16 |
| 35 | 6ZSE|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 2020-09-16 |
Release history
| Release | 3.184 |
|---|---|
| Date | 2021-06-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_73428.11 | NR_all_73428.10 | 3.184 | (30) 6VLZ|1|B, 7OF0|1|B, 6ZSC|1|XB, 7A5H|1|B, 6ZSB|1|XB, 7A5G|1|B3, 6I9R|1|B, 7L20|1|B, 6ZSA|1|XB, 7OF6|1|B, 7A5F|1|B3, 5OOM|1|B, 7L08|1|B, 6ZS9|1|XB, 7OF5|1|B, 6ZSG|1|XB, 5OOL|1|B, 7A5K|1|B3, 6ZM6|1|B, 7OF4|1|B, 6ZSE|1|XB, 3J9M|1|B, 7A5J|1|B, 6ZM5|1|B, 7OF3|1|B, 6ZSD|1|XB, 3J7Y|1|B, 7A5I|1|B3, 6VMI|1|B, 7OF2|1|B | (5) 7OF7|1|B, 7OG4|1|XB, 7ODR|1|B, 7ODT|1|B, 7ODS|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_73428.11 | NR_all_73428.12 | 3.185 | (35) 5OOM|1|B, 6ZSB|1|XB, 7A5I|1|B3, 7OF0|1|B, 5OOL|1|B, 6ZSA|1|XB, 7A5H|1|B, 7ODT|1|B, 7OG4|1|XB, 3J9M|1|B, 6ZS9|1|XB, 7A5G|1|B3, 7ODS|1|B, 7OF7|1|B, 3J7Y|1|B, 6ZM6|1|B, 7A5F|1|B3, 7ODR|1|B, 7OF6|1|B, 6ZM5|1|B, 6ZSG|1|XB, 7L20|1|B, 7OF5|1|B, 6VMI|1|B, 6ZSE|1|XB, 7L08|1|B, 7OF4|1|B, 6VLZ|1|B, 6ZSD|1|XB, 7A5K|1|B3, 7OF3|1|B, 6I9R|1|B, 6ZSC|1|XB, 7A5J|1|B, 7OF2|1|B | (0) | (2) 7O9M|1|B, 7O9K|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7A5I|1|B3 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 56 |
| 2 | 7A5G|1|B3 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 56 |
| 3 | 7A5F|1|B3 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 56 |
| 4 | 7A5K|1|B3 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 56 |
| 5 | 3J7Y|1|B | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 57 |
| 6 | 3J9M|1|B | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 56 |
| 7 | 7A5H|1|B | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 56 |
| 8 | 7A5J|1|B | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 56 |
| 9 | 5OOM|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 56 |
| 10 | 5OOL|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 56 |
| 11 | 7OF7|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 56 |
| 12 | 7OF0|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 56 |
| 13 | 7OF3|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 14 | 7OF5|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 56 |
| 15 | 7OF2|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 56 |
| 16 | 7OF6|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 56 |
| 17 | 7OF4|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 18 | 7L08|1|B | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 56 |
| 19 | 7L20|1|B | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 56 |
| 20 | 6VLZ|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 56 |
| 21 | 6VMI|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 56 |
| 22 | 6I9R|1|B | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | ELECTRON MICROSCOPY | 3.9 | 60 |
| 23 | 7OG4|1|XB | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 59 |
| 24 | 6ZSC|1|XB | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 59 |
| 25 | 6ZSB|1|XB | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 59 |
| 26 | 6ZSA|1|XB | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 59 |
| 27 | 6ZSD|1|XB | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 59 |
| 28 | 6ZSG|1|XB | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 59 |
| 29 | 6ZS9|1|XB | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 59 |
| 30 | 6ZSE|1|XB | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 59 |
| 31 | 7ODT|1|B | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 32 | 6ZM6|1|B | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 72 |
| 33 | 6ZM5|1|B | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 72 |
| 34 | 7ODS|1|B | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 35 | 7ODR|1|B | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 72 |