BGSU RNA Site //

Equivalence class NR_all_73827.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction12014-11-19
2480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.51999-10-08
33DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.972009-03-24
41MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.412003-02-25
53DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction12009-03-24
63DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction12009-03-24
73S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.12012-04-11
84NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coliBacteria2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.162014-12-10
93S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliBacteriaCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.22012-04-11
101Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.042003-11-25
11483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.111999-10-08
123DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.962009-03-24
134NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.012014-11-19
143DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction12009-03-24

Release history

Release2.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.49
Date2014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_73827.2NR_all_73827.12.1(13) 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A(1) 4NXH|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_73827.2NR_1.5_73827.32.50(14) 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_2.0_73827.32.50(14) 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_2.5_73827.32.50(14) 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_20.0_73827.32.50(14) 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_3.0_73827.32.50(14) 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_3.5_73827.32.50(14) 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_4.0_73827.32.50(14) 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A(0) (1) 4Y27|1|A
NR_all_73827.2NR_all_73827.32.50(14) 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A(0) (1) 4Y27|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
2480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
33S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
43DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
53DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
64NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
73DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
84NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
93DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
103DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
113S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
121Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
13483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
141MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131