BGSU RNA Site //

Equivalence class NR_all_74023.3 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16S0X|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.422019-08-21
25NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92017-10-04
36S13|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.582019-08-21
45ND8|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72017-06-28
55ND9|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72017-06-28
65LI0|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF0017770S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82016-12-28
75T7V|1|ASmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62017-05-31
85TCU|1|ASmall subunit ribosomal RNA16S RRNAStaphylococcus aureusBacteriaRF00177Methicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92017-05-24
96FXC|1|BaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762018-03-21
105NG8|1|Aa16S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762017-10-04
115NG8|1|Ba16S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762017-10-04
126FXC|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762018-03-21

Release history

Release3.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.150
Date2019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_74023.3NR_all_74023.23.88(10) 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5NG8|1|Ba, 5NG8|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a(2) 6S0X|1|a, 6S13|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_74023.3NR_all_74023.43.151(10) 6FXC|1|Aa, 5NGM|1|Aa, 6FXC|1|Ba, 5T7V|1|A, 6S0X|1|a, 5LI0|1|a, 5TCU|1|A, 6S13|1|a, 5ND8|1|a, 5ND9|1|a(2) 5NG8|1|Ba, 5NG8|1|Aa(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
26S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
36FXC|1|AaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
46FXC|1|BaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
55NG8|1|AaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
65NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
75NG8|1|BaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
85ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
95ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
105LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
115TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
125T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419