RNA 3D Hub //

Equivalence class NR_all_74023.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16S0X|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
25NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
37NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
47NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
56YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
66S13|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.582019-08-21
75ND8|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
85ND9|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
97KWG|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidineElectron microscopy3.752021-01-27
105LI0|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
115T7V|1|ASmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
125TCU|1|ASmall subunit ribosomal RNA16S RRNAStaphylococcus aureusBacteriaRF00177Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24
136FXC|1|BaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21
146FXC|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21

Release history

Release3.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.204
Date2021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_74023.6NR_all_74023.53.177(12) 7KWG|1|a, 6YEF|1|a, 6S13|1|a, 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a(2) 7NHM|1|a, 7NHL|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_74023.6NR_all_74023.73.205(14) 5ND8|1|a, 6S13|1|a, 5LI0|1|a, 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 7NHM|1|a, 5T7V|1|A, 7NHL|1|a, 5NGM|1|Aa, 7KWG|1|a, 5ND9|1|a, 6YEF|1|a(0) (2) 7ASO|1|X, 7ASP|1|X

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
26S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
36FXC|1|AaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
46FXC|1|BaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
55NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
65ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
77KWG|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.751552
87NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
97NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
105LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
115ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
126YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21540
135TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
145T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419
Copyright 2023 BGSU RNA group. Page generated in 0.6783 s