Equivalence class NR_all_74023.9 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6S0X|1|a (rep) | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
| 2 | 5NGM|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 3 | 7P48|1|a | Small subunit ribosomal RNA | 16S rRNA | Staphylococcus aureus | Bacteria | RF00177 | Staphylococcus aureus ribosome in complex with Sal(B) | Electron microscopy | 2.9 | 2022-02-02 |
| 4 | 7ASP|1|X | Small subunit ribosomal RNA | 16S rRNA | Staphylococcus aureus | Bacteria | RF00177 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | Electron microscopy | 2.86 | 2021-11-17 |
| 5 | 7NHL|1|a | Small subunit ribosomal RNA | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 6 | 7NHM|1|a | Small subunit ribosomal RNA | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 7 | 6YEF|1|a | Small subunit ribosomal RNA | 16S rRNA, mRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | Electron microscopy | 3.2 | 2021-01-27 |
| 8 | 7ASO|1|X | Small subunit ribosomal RNA | 16S | Staphylococcus aureus | Bacteria | RF00177 | Staphylococcus aureus 70S after 30 minutes incubation at 37C | Electron microscopy | 3.11 | 2021-11-17 |
| 9 | 6S13|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.58 | 2019-08-21 |
| 10 | 5ND8|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 11 | 5ND9|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 12 | 7KWG|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | Electron microscopy | 3.75 | 2021-01-27 |
| 13 | 5LI0|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 14 | 5T7V|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 15 | 7BGD|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | Electron microscopy | 3.2 | 2021-12-08 |
| 16 | 5TCU|1|A | Small subunit ribosomal RNA | 16S RRNA | Staphylococcus aureus | Bacteria | RF00177 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 17 | 7BGE|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00177 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | Electron microscopy | 3.6 | 2021-12-08 |
| 18 | 6FXC|1|Ba | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 19 | 6FXC|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00177 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
Release history
| Release | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_74023.9 | NR_all_74023.8 | 3.216 | (18) 7NHM|1|a, 7NHL|1|a, 7KWG|1|a, 7BGE|1|a, 7BGD|1|a, 7ASP|1|X, 7ASO|1|X, 6YEF|1|a, 6S13|1|a, 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a | (1) 7P48|1|a | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_74023.9 | NR_all_74023.10 | 3.301 | (19) 5LI0|1|a, 6S0X|1|a, 7NHL|1|a, 6FXC|1|Ba, 7KWG|1|a, 6FXC|1|Aa, 7BGE|1|a, 5TCU|1|A, 7BGD|1|a, 5T7V|1|A, 7ASP|1|X, 5NGM|1|Aa, 7ASO|1|X, 5ND9|1|a, 6YEF|1|a, 7P48|1|a, 5ND8|1|a, 6S13|1|a, 7NHM|1|a | (0) | (2) 8BH6|1|a, 8BH7|1|a |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7BGE|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | ELECTRON MICROSCOPY | 3.6 | 465 |
| 2 | 5TCU|1|A | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 1464 |
| 3 | 7P48|1|a | Staphylococcus aureus ribosome in complex with Sal(B) | ELECTRON MICROSCOPY | 2.9 | 1479 |
| 4 | 6YEF|1|a | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 1540 |
| 5 | 5ND8|1|a | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 1542 |
| 6 | 5LI0|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 1547 |
| 7 | 7NHM|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1531 |
| 8 | 7NHL|1|a | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1538 |
| 9 | 7KWG|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | ELECTRON MICROSCOPY | 3.75 | 1552 |
| 10 | 7BGD|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | ELECTRON MICROSCOPY | 3.2 | 1096 |
| 11 | 5ND9|1|a | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 1541 |
| 12 | 5NGM|1|Aa | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 1539 |
| 13 | 6FXC|1|Ba | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 |
| 14 | 6FXC|1|Aa | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 |
| 15 | 6S0X|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 1539 |
| 16 | 6S13|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 1539 |
| 17 | 5T7V|1|A | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 1419 |
| 18 | 7ASO|1|X | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 1415 |
| 19 | 7ASP|1|X | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 1447 |
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