Equivalence class NR_all_74156.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 2014-11-19 | |||
| 2 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 2014-11-19 | |||
| 3 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') | Influenza B virus | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 2016-12-21 | |||
| 4 | 5MSG|1|V+ 5MSG|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3') | Influenza B virus | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-ray diffraction | 3.8 | 2017-02-08 | |||
| 5 | 6F5O|1|V+ 6F5O|1|R | 5' promoter vRNA, 3' promoter vRNA | Influenza B virus | A mechanism for the activation of the influenza virus transcriptase | Electron microscopy | 9.8 | 2018-06-27 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_74156.4 | NR_all_74156.3 | 3.28 | (4) 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R | (1) 6F5O|1|V+6F5O|1|R | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_74156.4 | NR_all_45043.1 | 3.77 | (5) 5MSG|1|V+5MSG|1|R, 4WRT|1|V+4WRT|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 6F5O|1|V+6F5O|1|R | (0) | (5) 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5MSG|1|V+5MSG|1|R | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-RAY DIFFRACTION | 3.8 | 14 |
| 2 | 5M3J|1|V+5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 14 |
| 3 | 4WSA|1|V+4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 14 |
| 4 | 6F5O|1|V+6F5O|1|R | A mechanism for the activation of the influenza virus transcriptase | ELECTRON MICROSCOPY | 9.8 | 14 |
| 5 | 4WRT|1|V+4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 14 |