BGSU RNA Site //

Equivalence class NR_all_74981.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14RKV|1|A (rep)RNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.882014-11-19
24RNE|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
34RNE|1|FRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
41J8G|1|A5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
51RAU|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSolution NMR1994-01-31
64XK0|1|ARNA (5'-(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-ray diffraction1.082015-02-11
74RJ1|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.922014-11-12
84RKV|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.882014-11-19
91J8G|1|B5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
101RAU|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSolution NMR1994-01-31
114RJ1|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.922014-11-12
124RNE|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
131J8G|1|C5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
141RAU|1|CRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSolution NMR1994-01-31
154XK0|1|CRNA (5'-(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-ray diffraction1.082015-02-11
164RNE|1|CRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
171J8G|1|D5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
181RAU|1|DRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSolution NMR1994-01-31
194RNE|1|DRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
204RNE|1|ERNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
214RNE|1|GRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
224RNE|1|HRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_74981.1NR_all_09540.12.46(4) 1RAU|1|B, 1RAU|1|D, 1RAU|1|A, 1RAU|1|C(18) 4XK0|1|A, 4RNE|1|E, 1J8G|1|C, 4RNE|1|H, 4RNE|1|D, 1J8G|1|B, 4RNE|1|G, 4RNE|1|C, 1J8G|1|A, 4RNE|1|F, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 4XK0|1|C(0)
NR_all_74981.1NR_all_49177.12.46(1) 4XK0|1|A(21) 4XK0|1|C, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1RAU|1|D, 1RAU|1|C, 1RAU|1|B, 1RAU|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A(0)
NR_all_74981.1NR_all_50180.12.46(1) 4RJ1|1|B(21) 1RAU|1|B, 1RAU|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4XK0|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|A, 1RAU|1|D, 1RAU|1|C(0)
NR_all_74981.1NR_all_50286.12.46(2) 1J8G|1|B, 4RKV|1|B(20) 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 4XK0|1|C, 1RAU|1|D, 4XK0|1|A, 1RAU|1|C, 4RNE|1|H, 1RAU|1|B, 1RAU|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A(0)
NR_all_74981.1NR_all_83491.22.46(14) 4RNE|1|A, 4RNE|1|E, 1J8G|1|C, 4XK0|1|C, 1J8G|1|A, 4RKV|1|A, 4RNE|1|D, 4RNE|1|H, 4RJ1|1|A, 4RNE|1|C, 4RNE|1|G, 4RNE|1|B, 4RNE|1|F, 1J8G|1|D(8) 1RAU|1|B, 1J8G|1|B, 1RAU|1|A, 4XK0|1|A, 4RKV|1|B, 4RJ1|1|B, 1RAU|1|D, 1RAU|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_74981.1NR_all_01612.12.93(4) 1RAU|1|A, 1RAU|1|B, 1RAU|1|C, 1RAU|1|D(18) 1J8G|1|A, 4XK0|1|A, 4RNE|1|G, 4RNE|1|E, 4RNE|1|C, 4RNE|1|B, 4RKV|1|B, 4RJ1|1|B, 1J8G|1|D, 1J8G|1|C, 4RNE|1|D, 4RJ1|1|A, 4RNE|1|F, 4RKV|1|A, 4RNE|1|H, 4RNE|1|A, 1J8G|1|B, 4XK0|1|C(0)
NR_all_74981.1NR_all_09702.12.93(1) 4RJ1|1|B(21) 4RJ1|1|A, 1J8G|1|B, 4RNE|1|G, 4RKV|1|B, 1J8G|1|D, 4XK0|1|A, 4RNE|1|B, 1RAU|1|B, 4RNE|1|D, 1RAU|1|D, 1J8G|1|A, 4RNE|1|F, 4RKV|1|A, 1J8G|1|C, 4RNE|1|H, 4RNE|1|A, 1RAU|1|A, 4XK0|1|C, 4RNE|1|C, 1RAU|1|C, 4RNE|1|E(0)
NR_all_74981.1NR_all_31074.12.93(14) 4XK0|1|C, 1J8G|1|D, 4RKV|1|A, 4RNE|1|B, 4RNE|1|D, 4RNE|1|F, 4RNE|1|H, 1J8G|1|A, 1J8G|1|C, 4RJ1|1|A, 4RNE|1|A, 4RNE|1|C, 4RNE|1|E, 4RNE|1|G(8) 1RAU|1|B, 1RAU|1|C, 1RAU|1|D, 4RJ1|1|B, 4RKV|1|B, 4XK0|1|A, 1J8G|1|B, 1RAU|1|A(0)
NR_all_74981.1NR_all_41566.12.93(2) 1J8G|1|B, 4RKV|1|B(20) 4RNE|1|A, 1RAU|1|D, 1RAU|1|A, 4XK0|1|C, 4RNE|1|F, 4RNE|1|C, 4RJ1|1|B, 1RAU|1|C, 1J8G|1|C, 4RNE|1|H, 4RNE|1|E, 4RJ1|1|A, 1J8G|1|A, 4RNE|1|G, 4RKV|1|A, 1J8G|1|D, 4XK0|1|A, 4RNE|1|B, 1RAU|1|B, 4RNE|1|D(0)
NR_all_74981.1NR_all_81309.12.93(1) 4XK0|1|A(21) 1J8G|1|C, 4RNE|1|G, 4RKV|1|B, 1RAU|1|A, 4XK0|1|C, 4RNE|1|B, 1RAU|1|C, 4RNE|1|D, 4RJ1|1|A, 1J8G|1|B, 4RNE|1|F, 4RKV|1|A, 1J8G|1|D, 4RNE|1|H, 4RNE|1|A, 1RAU|1|B, 4RNE|1|C, 1RAU|1|D, 1J8G|1|A, 4RNE|1|E, 4RJ1|1|B(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14XK0|1|ACrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-RAY DIFFRACTION1.086
24RJ1|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.926
34XK0|1|CCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-RAY DIFFRACTION1.086
41J8G|1|AX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
54RNE|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
64RNE|1|DStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
74RKV|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.8810
84RNE|1|CStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
94RNE|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
104RNE|1|FStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
114RNE|1|EStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
124RNE|1|HStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
134RNE|1|GStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
141J8G|1|CX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
154RJ1|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.926
161J8G|1|DX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
174RKV|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.886
181J8G|1|BX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
191RAU|1|ASOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSOLUTION NMR6
201RAU|1|CSOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSOLUTION NMR6
211RAU|1|BSOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSOLUTION NMR6
221RAU|1|DSOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURESSOLUTION NMR6