Equivalence class NR_all_75422.3 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 5UP6|1|R (rep) | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.74 | 2017-03-29 | |
| 2 | 5UPA|1|R | RNA (5'-R(*GP*CP*A*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.05 | 2017-04-05 | |
| 3 | 6J9E|1|I | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 2019-07-17 |
| 4 | 5UPC|1|R | RNA (5'-R(*GP*CP*A*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.38 | 2017-03-29 | |
| 5 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 2018-07-25 |
| 6 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 2019-07-17 |
| 7 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 8 | 6ALG|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.7 | 2017-08-16 |
| 9 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 10 | 6ALF|1|R | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.1 | 2017-08-16 |
| 11 | 6ALH|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.4 | 2017-08-16 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_75422.3 | NR_all_04731.1 | 3.98 | (4) 6ALH|1|R, 6J9F|1|I, 5UPC|1|R, 6J9E|1|I | (7) 5UPA|1|R, 6ALG|1|R, 6C6T|1|R, 5UP6|1|R, 6ALF|1|R, 6C6S|1|R, 6C6U|1|R | (0) |
| NR_all_75422.3 | NR_all_87089.1 | 3.98 | (7) 6ALG|1|R, 5UPA|1|R, 6C6T|1|R, 5UP6|1|R, 6C6S|1|R, 6ALF|1|R, 6C6U|1|R | (4) 5UPC|1|R, 6ALH|1|R, 6J9E|1|I, 6J9F|1|I | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5UPA|1|R | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.05 | 17 |
| 2 | 6ALF|1|R | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.1 | 12 |
| 3 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 4 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 5 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 6 | 5UP6|1|R | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.74 | 17 |
| 7 | 6ALG|1|R | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.7 | 10 |
| 8 | 5UPC|1|R | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.38 | 17 |
| 9 | 6ALH|1|R | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.4 | 10 |
| 10 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 |
| 11 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 |